Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   D2E16_RS09390 Genome accession   NZ_CP032064
Coordinates   1928341..1928985 (+) Length   214 a.a.
NCBI ID   WP_192369039.1    Uniprot ID   -
Organism   Streptococcus suis strain YSJ17     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1923341..1933985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2E16_RS09365 (D2E16_09645) - 1924016..1925353 (-) 1338 WP_192369041.1 hemolysin family protein -
  D2E16_RS09370 (D2E16_09650) - 1925471..1926250 (+) 780 WP_192369040.1 ABC transporter ATP-binding protein -
  D2E16_RS09375 (D2E16_09655) - 1926266..1926820 (-) 555 WP_044690660.1 tRNA (mnm(5)s(2)U34)-methyltransferase -
  D2E16_RS09380 (D2E16_09660) - 1926830..1927348 (-) 519 WP_024409521.1 TetR/AcrR family transcriptional regulator -
  D2E16_RS09385 (D2E16_09665) - 1927470..1928288 (+) 819 WP_044755613.1 cation diffusion facilitator family transporter -
  D2E16_RS09390 (D2E16_09670) cclA/cilC 1928341..1928985 (+) 645 WP_192369039.1 prepilin peptidase Machinery gene
  D2E16_RS09395 (D2E16_09675) - 1929039..1930499 (+) 1461 WP_192369038.1 nicotinate phosphoribosyltransferase -
  D2E16_RS09400 (D2E16_09680) nadE 1930512..1931336 (+) 825 WP_192369037.1 ammonia-dependent NAD(+) synthetase -
  D2E16_RS09405 (D2E16_09685) trpB 1931378..1932553 (-) 1176 WP_192369077.1 tryptophan synthase subunit beta -
  D2E16_RS09410 (D2E16_09690) - 1933083..1933604 (-) 522 WP_192369036.1 VanZ family protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24272.35 Da        Isoelectric Point: 8.7013

>NTDB_id=313542 D2E16_RS09390 WP_192369039.1 1928341..1928985(+) (cclA/cilC) [Streptococcus suis strain YSJ17]
MKTIILFFLGASIGSFLGLVIDRFPEQSIIAPSSHCNACKRRLKAWDLVPIISQLSTKSKCRYCKAKIPYWYLGLEFLAG
LLVLLCHFQVLNLTETILILAGLVLTIYDIKHQEYPFAVWLVFTFIALLLSQLNWLFCGLLVLAYLTEKWQLNIGSGDFL
YLASLSLLFGVTEILWIIQISSILGLAIFFIFKPKSLPYVPFLFLASLIINITL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=313542 D2E16_RS09390 WP_192369039.1 1928341..1928985(+) (cclA/cilC) [Streptococcus suis strain YSJ17]
ATGAAGACAATTATCCTATTTTTCCTGGGAGCTTCTATCGGCTCCTTCCTGGGATTGGTCATCGACCGTTTCCCTGAACA
GTCCATTATCGCCCCATCTAGTCACTGCAATGCCTGCAAACGACGGCTCAAGGCTTGGGATTTAGTCCCTATTATTTCCC
AGCTTTCCACAAAATCTAAATGCCGTTACTGCAAGGCGAAGATACCTTATTGGTATCTGGGACTGGAATTCTTAGCTGGT
CTATTGGTCCTGCTCTGCCATTTTCAAGTCCTAAACCTAACCGAAACCATTCTTATCTTGGCAGGGCTTGTTTTGACCAT
TTATGACATCAAGCATCAGGAATACCCTTTTGCTGTCTGGCTCGTTTTTACTTTTATAGCTCTGCTACTCTCCCAGCTCA
ACTGGCTCTTCTGTGGCCTTTTGGTCCTGGCCTATCTGACTGAAAAATGGCAACTCAATATTGGATCTGGTGATTTTCTC
TATCTGGCAAGTCTCTCTCTTTTGTTTGGCGTGACCGAAATTCTCTGGATTATCCAGATTAGTTCCATCTTGGGACTGGC
GATCTTTTTCATCTTCAAACCAAAATCCCTTCCCTATGTACCTTTTCTATTTTTGGCCAGTCTCATTATCAATATCACTC
TCTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

48.815

98.598

0.481
  cclA/cilC Streptococcus pneumoniae Rx1

48.78

95.794

0.467
  cclA/cilC Streptococcus pneumoniae D39

48.78

95.794

0.467
  cclA/cilC Streptococcus pneumoniae R6

48.78

95.794

0.467
  cclA/cilC Streptococcus mitis NCTC 12261

46.919

98.598

0.463
  cclA/cilC Streptococcus pneumoniae TIGR4

47.805

95.794

0.458

Multiple sequence alignment