Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   D2E16_RS02400 Genome accession   NZ_CP032064
Coordinates   488473..489138 (+) Length   221 a.a.
NCBI ID   WP_104929408.1    Uniprot ID   -
Organism   Streptococcus suis strain YSJ17     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 483473..494138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2E16_RS02375 (D2E16_02460) - 483684..485084 (+) 1401 WP_029186185.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  D2E16_RS02380 (D2E16_02465) - 485086..485457 (+) 372 WP_002937017.1 S1 RNA-binding domain-containing protein -
  D2E16_RS02385 (D2E16_02470) cysK 485483..486409 (-) 927 WP_044687885.1 cysteine synthase A -
  D2E16_RS02390 (D2E16_02475) - 486499..487131 (-) 633 WP_192370181.1 YigZ family protein -
  D2E16_RS02395 (D2E16_02480) comFA/cflA 487188..488480 (+) 1293 WP_192370179.1 DEAD/DEAH box helicase Machinery gene
  D2E16_RS02400 (D2E16_02485) comFC/cflB 488473..489138 (+) 666 WP_104929408.1 ComF family protein Machinery gene
  D2E16_RS02405 (D2E16_02490) hpf 489216..489758 (+) 543 WP_014637536.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25781.58 Da        Isoelectric Point: 8.4541

>NTDB_id=313521 D2E16_RS02400 WP_104929408.1 488473..489138(+) (comFC/cflB) [Streptococcus suis strain YSJ17]
MSNCLLCGQAMKNKTRFSDLIFFSKEKSGICEECFSTFEEITEQHCPHCYKNGESESCKDCQYWQNQGKTVVHTALYQYN
QAMAHYFSRYKFQGDYVLRNIFAKKLRIALSQFPDYTIVPIPISQKRLSERGFNQVEGLLNATNIPYQSLLGKYESQKQS
SKNRAERLEAKQMFYLLDEKEVPEKILLFDDIYTTGATIQLAVELFMKIGRKEIKTFSLTR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=313521 D2E16_RS02400 WP_104929408.1 488473..489138(+) (comFC/cflB) [Streptococcus suis strain YSJ17]
ATGTCTAATTGTCTATTGTGCGGTCAAGCTATGAAAAATAAAACAAGATTTTCAGATCTCATCTTCTTTAGTAAAGAAAA
ATCGGGTATATGTGAAGAATGTTTTTCAACTTTTGAGGAAATAACAGAGCAACACTGTCCACATTGTTATAAAAATGGAG
AATCGGAAAGTTGCAAGGATTGTCAGTACTGGCAGAATCAAGGGAAAACAGTTGTCCACACAGCTTTGTACCAATATAAT
CAAGCGATGGCACATTATTTTAGTCGCTACAAATTTCAAGGAGACTATGTTTTAAGAAATATTTTTGCTAAAAAGCTTAG
AATAGCGTTAAGCCAGTTTCCTGACTACACAATTGTTCCTATACCAATTAGTCAAAAACGACTATCAGAACGCGGTTTTA
ATCAAGTGGAAGGACTTTTGAATGCTACAAATATTCCCTATCAGTCCCTTCTTGGAAAGTATGAAAGCCAAAAACAATCA
TCTAAAAATCGTGCAGAGAGACTAGAAGCAAAACAGATGTTCTATCTATTAGATGAAAAAGAAGTGCCAGAAAAAATATT
ATTATTCGACGATATATATACAACAGGAGCCACAATCCAACTTGCTGTAGAACTTTTCATGAAAATTGGTAGGAAAGAAA
TCAAAACATTTTCACTAACACGATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae TIGR4

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae Rx1

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae D39

49.083

98.643

0.484
  comFC/cflB Streptococcus pneumoniae R6

49.083

98.643

0.484
  comFC/cflB Streptococcus mitis NCTC 12261

49.083

98.643

0.484

Multiple sequence alignment