Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LL267_RS11970 | Genome accession | NZ_CP032058 |
| Coordinates | 2334916..2335416 (-) | Length | 166 a.a. |
| NCBI ID | WP_003131953.1 | Uniprot ID | - |
| Organism | Lactococcus lactis subsp. lactis strain 267 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2331114..2356873 | 2334916..2335416 | within | 0 |
Gene organization within MGE regions
Location: 2331114..2356873
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LL267_RS11950 (LL267_2286) | - | 2332249..2333097 (+) | 849 | WP_003131770.1 | MurR/RpiR family transcriptional regulator | - |
| LL267_RS11955 (LL267_2287) | - | 2333135..2333443 (+) | 309 | WP_017865196.1 | DUF960 domain-containing protein | - |
| LL267_RS11960 (LL267_2288) | - | 2333525..2334298 (-) | 774 | WP_003131951.1 | metallophosphoesterase | - |
| LL267_RS11965 (LL267_2289) | rpsR | 2334498..2334743 (-) | 246 | WP_003131952.1 | 30S ribosomal protein S18 | - |
| LL267_RS11970 (LL267_2290) | ssb | 2334916..2335416 (-) | 501 | WP_003131953.1 | single-stranded DNA-binding protein | Machinery gene |
| LL267_RS11975 (LL267_2291) | rpsF | 2335446..2335739 (-) | 294 | WP_003131954.1 | 30S ribosomal protein S6 | - |
| LL267_RS11980 (LL267_2292) | - | 2335931..2336785 (-) | 855 | WP_058221735.1 | undecaprenyl-diphosphate phosphatase | - |
| LL267_RS11985 (LL267_2293) | - | 2337308..2338774 (+) | 1467 | WP_017865200.1 | amino acid permease | - |
| LL267_RS11990 (LL267_2294) | dnaX | 2338809..2340467 (-) | 1659 | WP_058221736.1 | DNA polymerase III subunit gamma/tau | - |
| LL267_RS11995 (LL267_2295) | - | 2340516..2341157 (-) | 642 | WP_003131958.1 | phosphotransferase | - |
| LL267_RS12000 (LL267_2296) | - | 2341188..2341676 (-) | 489 | WP_003131959.1 | GAF domain-containing protein | - |
| LL267_RS12005 (LL267_2297) | - | 2341760..2342032 (+) | 273 | WP_003131960.1 | chorismate mutase | - |
| LL267_RS12010 (LL267_2298) | - | 2342120..2342566 (-) | 447 | WP_003131961.1 | hypothetical protein | - |
| LL267_RS12015 (LL267_2299) | - | 2342856..2344040 (-) | 1185 | WP_058221737.1 | site-specific integrase | - |
| LL267_RS12020 (LL267_2300) | - | 2344539..2344733 (-) | 195 | WP_058221577.1 | hypothetical protein | - |
| LL267_RS12025 (LL267_2301) | - | 2345537..2345851 (-) | 315 | WP_011835952.1 | hypothetical protein | - |
| LL267_RS12030 (LL267_2302) | - | 2346586..2347530 (-) | 945 | WP_058221334.1 | Abi family protein | - |
| LL267_RS12035 (LL267_2303) | - | 2347991..2348185 (-) | 195 | WP_021212116.1 | hypothetical protein | - |
| LL267_RS12040 (LL267_03170) | - | 2348821..2349012 (-) | 192 | Protein_2339 | helix-turn-helix domain-containing protein | - |
| LL267_RS12045 (LL267_2305) | - | 2349272..2349469 (+) | 198 | WP_011677058.1 | hypothetical protein | - |
| LL267_RS12050 (LL267_03175) | - | 2349473..2349721 (+) | 249 | WP_058221815.1 | hypothetical protein | - |
| LL267_RS12055 (LL267_2306) | - | 2349836..2350030 (+) | 195 | WP_058221814.1 | DUF1655 domain-containing protein | - |
| LL267_RS12060 (LL267_2307) | - | 2350034..2350558 (+) | 525 | WP_082225264.1 | hypothetical protein | - |
| LL267_RS12065 (LL267_2308) | - | 2350555..2350806 (+) | 252 | WP_082225265.1 | helix-turn-helix transcriptional regulator | - |
| LL267_RS12070 (LL267_03180) | - | 2350803..2351069 (+) | 267 | WP_284201153.1 | hypothetical protein | - |
| LL267_RS12075 (LL267_2309) | - | 2351284..2351565 (+) | 282 | WP_082225266.1 | hypothetical protein | - |
| LL267_RS12080 (LL267_2310) | - | 2351608..2351847 (+) | 240 | WP_058221371.1 | hypothetical protein | - |
| LL267_RS12085 (LL267_2312) | - | 2352095..2352289 (+) | 195 | WP_047687087.1 | hypothetical protein | - |
| LL267_RS12090 (LL267_2313) | - | 2352276..2352605 (+) | 330 | WP_058221372.1 | hypothetical protein | - |
| LL267_RS12095 (LL267_2314) | - | 2352609..2353403 (+) | 795 | WP_082225267.1 | bifunctional DNA primase/polymerase | - |
| LL267_RS12100 (LL267_2315) | - | 2353414..2355048 (+) | 1635 | WP_082225268.1 | phage/plasmid primase, P4 family | - |
| LL267_RS12105 (LL267_2316) | - | 2355261..2355443 (+) | 183 | WP_003131978.1 | hypothetical protein | - |
| LL267_RS12110 (LL267_2317) | - | 2355470..2356078 (+) | 609 | WP_003131979.1 | hypothetical protein | - |
| LL267_RS12115 (LL267_2318) | - | 2356087..2356677 (+) | 591 | WP_003131980.1 | HK97 family phage prohead protease | - |
Sequence
Protein
Download Length: 166 a.a. Molecular weight: 18304.13 Da Isoelectric Point: 5.2279
>NTDB_id=313497 LL267_RS11970 WP_003131953.1 2334916..2335416(-) (ssb) [Lactococcus lactis subsp. lactis strain 267]
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSAGSYSAPSQSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEIS
DDDLPF
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSAGSYSAPSQSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEIS
DDDLPF
Nucleotide
Download Length: 501 bp
>NTDB_id=313497 LL267_RS11970 WP_003131953.1 2334916..2335416(-) (ssb) [Lactococcus lactis subsp. lactis strain 267]
ATGATTAACAATGTTGTATTAGTAGGACGCATTACTCGCGATCCTGAACTTCGATACACCCCTCAAAATCAAGCTGTCGC
AACATTTTCATTGGCTGTAAACCGTCAATTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAGAATTTGGCGAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGACAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGAAGGTATGGGAGGCGGAACTTCTGCTGGTTCATATTCTGCACCTAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAACAATAATGCAACACCGAATTTCGGTCGTGATGCTGATCCGTTTGGTAGCTCACCGATGGAAATTTCG
GATGATGACCTTCCATTCTAA
ATGATTAACAATGTTGTATTAGTAGGACGCATTACTCGCGATCCTGAACTTCGATACACCCCTCAAAATCAAGCTGTCGC
AACATTTTCATTGGCTGTAAACCGTCAATTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAGAATTTGGCGAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGACAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGAAGGTATGGGAGGCGGAACTTCTGCTGGTTCATATTCTGCACCTAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAACAATAATGCAACACCGAATTTCGGTCGTGATGCTGATCCGTTTGGTAGCTCACCGATGGAAATTTCG
GATGATGACCTTCCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60.465 |
100 |
0.627 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.803 |
100 |
0.602 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.855 |
0.373 |
| ssb | Glaesserella parasuis strain SC1401 |
35.028 |
100 |
0.373 |