Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | E3159_RS01775 | Genome accession | NZ_CP038376 |
| Coordinates | 380012..380548 (+) | Length | 178 a.a. |
| NCBI ID | WP_000168305.1 | Uniprot ID | A0A370V115 |
| Organism | Escherichia coli O157:H7 strain F1273 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 375012..385548
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E3159_RS01755 (E3159_01790) | aphA | 375300..376013 (+) | 714 | WP_001226923.1 | acid phosphatase AphA | - |
| E3159_RS01760 (E3159_01795) | yjbQ | 376124..376540 (+) | 417 | WP_000270375.1 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
| E3159_RS01765 (E3159_01800) | yjbR | 376544..376900 (+) | 357 | WP_000155657.1 | MmcQ/YjbR family DNA-binding protein | - |
| E3159_RS01770 (E3159_01805) | uvrA | 376935..379757 (-) | 2823 | WP_000357763.1 | excinuclease ABC subunit UvrA | Machinery gene |
| E3159_RS01775 (E3159_01810) | ssb | 380012..380548 (+) | 537 | WP_000168305.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| E3159_RS01780 (E3159_01815) | yjcB | 380647..380928 (-) | 282 | WP_001295689.1 | YjcB family protein | - |
| E3159_RS01785 (E3159_01820) | pdeC | 381357..382943 (+) | 1587 | WP_001016522.1 | c-di-GMP phosphodiesterase PdeC | - |
| E3159_RS01790 (E3159_01825) | soxS | 382946..383269 (-) | 324 | WP_000019358.1 | superoxide response transcriptional regulator SoxS | - |
| E3159_RS01795 (E3159_01830) | soxR | 383355..383819 (+) | 465 | WP_000412428.1 | redox-sensitive transcriptional activator SoxR | - |
Sequence
Protein
Download Length: 178 a.a. Molecular weight: 18975.00 Da Isoelectric Point: 5.2358
>NTDB_id=313442 E3159_RS01775 WP_000168305.1 380012..380548(+) (ssb) [Escherichia coli O157:H7 strain F1273]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF
Nucleotide
Download Length: 537 bp
>NTDB_id=313442 E3159_RS01775 WP_000168305.1 380012..380548(+) (ssb) [Escherichia coli O157:H7 strain F1273]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
74.444 |
100 |
0.753 |
| ssb | Glaesserella parasuis strain SC1401 |
57.923 |
100 |
0.596 |
| ssb | Neisseria meningitidis MC58 |
48.066 |
100 |
0.489 |
| ssb | Neisseria gonorrhoeae MS11 |
48.066 |
100 |
0.489 |