Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Ahae11616_RS00855 Genome accession   NZ_CP032002
Coordinates   188213..188794 (+) Length   193 a.a.
NCBI ID   WP_004641476.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain 11616     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 183213..193794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Ahae11616_RS00830 (Ahae11616_00835) - 183603..184175 (+) 573 WP_017396722.1 DUF2939 domain-containing protein -
  Ahae11616_RS00835 (Ahae11616_00840) - 184231..184584 (+) 354 WP_004641483.1 DUF1304 domain-containing protein -
  Ahae11616_RS00840 (Ahae11616_00845) tenA 184736..185410 (-) 675 WP_008941060.1 thiaminase II -
  Ahae11616_RS00845 (Ahae11616_00850) - 185583..186665 (+) 1083 WP_004641480.1 DUF475 domain-containing protein -
  Ahae11616_RS00850 (Ahae11616_00855) - 186797..188161 (+) 1365 WP_160124148.1 MFS transporter -
  Ahae11616_RS00855 (Ahae11616_00860) ssb 188213..188794 (+) 582 WP_004641476.1 single-stranded DNA-binding protein Machinery gene
  Ahae11616_RS00860 (Ahae11616_00870) - 189195..190628 (+) 1434 WP_160124149.1 amino acid permease -
  Ahae11616_RS00865 (Ahae11616_00875) - 190686..192188 (-) 1503 WP_008941075.1 PLP-dependent aminotransferase family protein -
  Ahae11616_RS00870 (Ahae11616_00880) gabT 192343..193635 (+) 1293 WP_008941076.1 4-aminobutyrate--2-oxoglutarate transaminase -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21211.89 Da        Isoelectric Point: 6.7311

>NTDB_id=313276 Ahae11616_RS00855 WP_004641476.1 188213..188794(+) (ssb) [Acinetobacter haemolyticus strain 11616]
MRGVNKVILVGTLGKDPETKTFPNGGSLTQFSIATSESWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYSTEIRGDQMQMLDSRQQSEQSGGDFNQPRFNNNQGGGYQNTGHNNNQNGYGQGGGFNGGNQGNY
AGNPQAGNGFNTPKSAPQPAATAPADLDDDLPF

Nucleotide


Download         Length: 582 bp        

>NTDB_id=313276 Ahae11616_RS00855 WP_004641476.1 188213..188794(+) (ssb) [Acinetobacter haemolyticus strain 11616]
ATGCGTGGTGTGAATAAAGTTATTTTAGTCGGTACTTTGGGTAAAGATCCAGAAACAAAGACTTTTCCGAATGGTGGCTC
GCTAACACAGTTCTCGATTGCAACAAGTGAATCGTGGACAGATAAAAATACAGGCGAACGTAAAGAGCAAACAGAGTGGC
ATCGTATTGTATTGCATAACCGTTTAGGTGAAATTGCACAGCAATATCTTCGCAAAGGTTCTAAAGTCTATATCGAAGGT
TCACTACGTACCCGTCAATGGACTGACCAAAATGGTCAAGAGCGCTACAGCACTGAAATTCGCGGTGATCAAATGCAAAT
GCTTGATTCACGTCAGCAAAGTGAACAAAGCGGTGGTGATTTCAATCAACCACGTTTTAACAATAATCAAGGCGGTGGTT
ACCAAAATACAGGTCATAACAACAATCAAAATGGTTATGGTCAAGGTGGTGGTTTTAATGGTGGTAATCAAGGCAATTAT
GCAGGCAATCCACAAGCGGGTAATGGTTTTAATACACCAAAGTCTGCACCACAACCTGCTGCGACAGCACCTGCTGATTT
AGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

53

100

0.549
  ssb Vibrio cholerae strain A1552

44.335

100

0.466
  ssb Neisseria meningitidis MC58

38.421

98.446

0.378
  ssb Neisseria gonorrhoeae MS11

38.421

98.446

0.378

Multiple sequence alignment