Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | Ahae2126ch_RS00975 | Genome accession | NZ_CP031991 |
| Coordinates | 211322..211903 (+) | Length | 193 a.a. |
| NCBI ID | WP_004641476.1 | Uniprot ID | - |
| Organism | Acinetobacter haemolyticus strain 2126ch | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 211322..263994 | 211322..211903 | within | 0 |
| IScluster/Tn | 212263..223468 | 211322..211903 | flank | 360 |
Gene organization within MGE regions
Location: 211322..263994
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Ahae2126ch_RS00975 (Ahae2126ch_00980) | ssb | 211322..211903 (+) | 582 | WP_004641476.1 | single-stranded DNA-binding protein | Machinery gene |
| Ahae2126ch_RS00980 (Ahae2126ch_00985) | - | 212059..212220 (+) | 162 | Protein_188 | site-specific integrase | - |
| Ahae2126ch_RS00990 (Ahae2126ch_00995) | - | 213495..214562 (+) | 1068 | Protein_190 | site-specific integrase | - |
| Ahae2126ch_RS00995 (Ahae2126ch_01000) | - | 214555..216030 (+) | 1476 | WP_160140344.1 | site-specific integrase | - |
| Ahae2126ch_RS01000 (Ahae2126ch_01005) | - | 216023..216370 (+) | 348 | Protein_192 | integrase | - |
| Ahae2126ch_RS01005 (Ahae2126ch_01010) | - | 216437..217527 (+) | 1091 | WP_076612069.1 | IS4-like element ISAba33 family transposase | - |
| Ahae2126ch_RS01010 (Ahae2126ch_01015) | - | 217524..219338 (+) | 1815 | WP_227554000.1 | integrase | - |
| Ahae2126ch_RS01015 (Ahae2126ch_01020) | - | 219340..219756 (+) | 417 | WP_125316907.1 | hypothetical protein | - |
| Ahae2126ch_RS17715 | - | 219892..220050 (+) | 159 | WP_017396150.1 | hypothetical protein | - |
| Ahae2126ch_RS01020 (Ahae2126ch_01025) | - | 220025..220399 (+) | 375 | WP_125316908.1 | antitoxin Xre-like helix-turn-helix domain-containing protein | - |
| Ahae2126ch_RS01025 (Ahae2126ch_01030) | - | 220466..220645 (+) | 180 | WP_125316909.1 | hypothetical protein | - |
| Ahae2126ch_RS01030 (Ahae2126ch_01035) | - | 220727..221892 (+) | 1166 | WP_125316763.1 | IS3 family transposase | - |
| Ahae2126ch_RS01040 (Ahae2126ch_01045) | - | 223558..228471 (+) | 4914 | Protein_201 | DEAD/DEAH box helicase | - |
| Ahae2126ch_RS01045 (Ahae2126ch_01055) | - | 229185..230384 (+) | 1200 | WP_151800620.1 | reverse transcriptase domain-containing protein | - |
| Ahae2126ch_RS01050 (Ahae2126ch_01060) | - | 230393..230944 (-) | 552 | WP_107908897.1 | recombinase family protein | - |
| Ahae2126ch_RS01055 (Ahae2126ch_01065) | - | 231378..232769 (+) | 1392 | WP_227554001.1 | ATP-binding protein | - |
| Ahae2126ch_RS01060 (Ahae2126ch_01070) | - | 233003..234158 (+) | 1156 | Protein_205 | IS3 family transposase | - |
| Ahae2126ch_RS01065 (Ahae2126ch_01075) | - | 234396..235391 (+) | 996 | WP_125316797.1 | Gfo/Idh/MocA family protein | - |
| Ahae2126ch_RS01070 (Ahae2126ch_01080) | - | 235400..236686 (+) | 1287 | WP_125316798.1 | DegT/DnrJ/EryC1/StrS family aminotransferase | - |
| Ahae2126ch_RS01075 (Ahae2126ch_01085) | - | 236735..237916 (+) | 1182 | WP_160140345.1 | inositol monophosphatase family protein | - |
| Ahae2126ch_RS01080 (Ahae2126ch_01090) | - | 237918..239075 (+) | 1158 | WP_125316800.1 | hypothetical protein | - |
| Ahae2126ch_RS01085 (Ahae2126ch_01095) | - | 239284..240231 (-) | 948 | WP_118903275.1 | Arc family DNA-binding protein | - |
| Ahae2126ch_RS01090 (Ahae2126ch_01100) | - | 240311..240487 (+) | 177 | WP_118903277.1 | Arc family DNA-binding protein | - |
| Ahae2126ch_RS01095 (Ahae2126ch_01105) | istA | 240644..242212 (+) | 1569 | WP_118903279.1 | IS21 family transposase | - |
| Ahae2126ch_RS01100 (Ahae2126ch_01110) | istB | 242205..242942 (+) | 738 | WP_118903281.1 | IS21-like element helper ATPase IstB | - |
| Ahae2126ch_RS01110 (Ahae2126ch_01125) | - | 245344..246777 (+) | 1434 | WP_017396719.1 | amino acid permease | - |
| Ahae2126ch_RS01115 (Ahae2126ch_01130) | - | 246835..248337 (-) | 1503 | WP_008941075.1 | PLP-dependent aminotransferase family protein | - |
| Ahae2126ch_RS01120 (Ahae2126ch_01135) | gabT | 248492..249784 (+) | 1293 | WP_008941076.1 | 4-aminobutyrate--2-oxoglutarate transaminase | - |
| Ahae2126ch_RS01125 (Ahae2126ch_01140) | - | 249781..251229 (+) | 1449 | WP_008941077.1 | NAD-dependent succinate-semialdehyde dehydrogenase | - |
| Ahae2126ch_RS01130 (Ahae2126ch_01145) | - | 251292..252272 (-) | 981 | WP_171057917.1 | LysR substrate-binding domain-containing protein | - |
| Ahae2126ch_RS01135 (Ahae2126ch_01150) | ycaC | 252296..252922 (-) | 627 | WP_004641467.1 | isochorismate family cysteine hydrolase YcaC | - |
| Ahae2126ch_RS01140 (Ahae2126ch_01155) | - | 253208..254068 (+) | 861 | WP_005088628.1 | pirin family protein | - |
| Ahae2126ch_RS01145 (Ahae2126ch_01160) | - | 254504..255802 (+) | 1299 | WP_005088626.1 | FAD-dependent oxidoreductase | - |
| Ahae2126ch_RS01150 (Ahae2126ch_01165) | - | 255804..256631 (+) | 828 | WP_008941079.1 | cyclopropane-fatty-acyl-phospholipid synthase family protein | - |
| Ahae2126ch_RS17875 (Ahae2126ch_01175) | - | 256821..256974 (+) | 154 | Protein_224 | HNH endonuclease | - |
| Ahae2126ch_RS01160 (Ahae2126ch_01180) | - | 257072..257263 (+) | 192 | WP_227554002.1 | hypothetical protein | - |
| Ahae2126ch_RS01165 (Ahae2126ch_01185) | - | 257316..257893 (+) | 578 | Protein_226 | transposase | - |
| Ahae2126ch_RS01175 (Ahae2126ch_01195) | - | 259312..259556 (-) | 245 | Protein_228 | transposase domain-containing protein | - |
| Ahae2126ch_RS01180 (Ahae2126ch_01200) | - | 259642..260079 (-) | 438 | WP_005088612.1 | hypothetical protein | - |
| Ahae2126ch_RS01185 (Ahae2126ch_01205) | - | 260076..261938 (-) | 1863 | WP_005088610.1 | DEAD/DEAH box helicase | - |
| Ahae2126ch_RS01190 (Ahae2126ch_01210) | - | 262042..262527 (-) | 486 | WP_160124150.1 | hypothetical protein | - |
| Ahae2126ch_RS01195 (Ahae2126ch_01215) | - | 262795..263994 (-) | 1200 | WP_017396498.1 | integrase arm-type DNA-binding domain-containing protein | - |
Sequence
Protein
Download Length: 193 a.a. Molecular weight: 21211.89 Da Isoelectric Point: 6.7311
>NTDB_id=313194 Ahae2126ch_RS00975 WP_004641476.1 211322..211903(+) (ssb) [Acinetobacter haemolyticus strain 2126ch]
MRGVNKVILVGTLGKDPETKTFPNGGSLTQFSIATSESWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYSTEIRGDQMQMLDSRQQSEQSGGDFNQPRFNNNQGGGYQNTGHNNNQNGYGQGGGFNGGNQGNY
AGNPQAGNGFNTPKSAPQPAATAPADLDDDLPF
MRGVNKVILVGTLGKDPETKTFPNGGSLTQFSIATSESWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYSTEIRGDQMQMLDSRQQSEQSGGDFNQPRFNNNQGGGYQNTGHNNNQNGYGQGGGFNGGNQGNY
AGNPQAGNGFNTPKSAPQPAATAPADLDDDLPF
Nucleotide
Download Length: 582 bp
>NTDB_id=313194 Ahae2126ch_RS00975 WP_004641476.1 211322..211903(+) (ssb) [Acinetobacter haemolyticus strain 2126ch]
ATGCGTGGTGTGAATAAAGTTATTTTAGTCGGTACTTTGGGTAAAGATCCAGAAACAAAGACTTTTCCGAATGGTGGCTC
GCTAACACAGTTCTCGATTGCAACAAGTGAATCGTGGACAGATAAAAATACAGGCGAACGTAAAGAGCAAACAGAGTGGC
ATCGTATTGTATTGCATAACCGTTTAGGTGAAATTGCACAGCAATATCTTCGCAAAGGTTCTAAAGTCTATATCGAAGGT
TCACTACGTACCCGTCAATGGACTGACCAAAATGGTCAAGAGCGCTACAGCACTGAAATTCGCGGTGATCAAATGCAAAT
GCTTGATTCACGTCAGCAAAGTGAACAAAGCGGTGGTGATTTCAATCAACCACGTTTTAACAATAATCAAGGCGGTGGTT
ACCAAAATACAGGTCATAACAACAATCAAAATGGTTATGGTCAAGGTGGTGGTTTTAATGGTGGTAATCAAGGCAATTAT
GCAGGCAATCCACAAGCGGGTAATGGTTTTAATACACCAAAGTCTGCACCACAACCTGCTGCGACAGCACCTGCTGATTT
AGATGATGATTTGCCATTCTGA
ATGCGTGGTGTGAATAAAGTTATTTTAGTCGGTACTTTGGGTAAAGATCCAGAAACAAAGACTTTTCCGAATGGTGGCTC
GCTAACACAGTTCTCGATTGCAACAAGTGAATCGTGGACAGATAAAAATACAGGCGAACGTAAAGAGCAAACAGAGTGGC
ATCGTATTGTATTGCATAACCGTTTAGGTGAAATTGCACAGCAATATCTTCGCAAAGGTTCTAAAGTCTATATCGAAGGT
TCACTACGTACCCGTCAATGGACTGACCAAAATGGTCAAGAGCGCTACAGCACTGAAATTCGCGGTGATCAAATGCAAAT
GCTTGATTCACGTCAGCAAAGTGAACAAAGCGGTGGTGATTTCAATCAACCACGTTTTAACAATAATCAAGGCGGTGGTT
ACCAAAATACAGGTCATAACAACAATCAAAATGGTTATGGTCAAGGTGGTGGTTTTAATGGTGGTAATCAAGGCAATTAT
GCAGGCAATCCACAAGCGGGTAATGGTTTTAATACACCAAAGTCTGCACCACAACCTGCTGCGACAGCACCTGCTGATTT
AGATGATGATTTGCCATTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
53 |
100 |
0.549 |
| ssb | Vibrio cholerae strain A1552 |
44.335 |
100 |
0.466 |
| ssb | Neisseria meningitidis MC58 |
38.421 |
98.446 |
0.378 |
| ssb | Neisseria gonorrhoeae MS11 |
38.421 |
98.446 |
0.378 |