Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | Ahae5227_RS17995 | Genome accession | NZ_CP031988 |
| Coordinates | 3221616..3222473 (+) | Length | 285 a.a. |
| NCBI ID | WP_008942282.1 | Uniprot ID | C0VHN3 |
| Organism | Acinetobacter haemolyticus strain 5227 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3216616..3227473
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Ahae5227_RS15500 (Ahae5227_15660) | secG | 3217140..3217469 (-) | 330 | WP_004637686.1 | preprotein translocase subunit SecG | - |
| Ahae5227_RS15505 (Ahae5227_15665) | tpiA | 3217482..3218273 (-) | 792 | WP_005088004.1 | triose-phosphate isomerase | - |
| Ahae5227_RS15510 (Ahae5227_15670) | pilB | 3218650..3220365 (+) | 1716 | WP_008942284.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| Ahae5227_RS15515 (Ahae5227_15675) | pilC | 3220390..3221616 (+) | 1227 | WP_008942283.1 | type II secretion system F family protein | Machinery gene |
| Ahae5227_RS17995 (Ahae5227_15680) | pilD | 3221616..3222473 (+) | 858 | WP_008942282.1 | prepilin peptidase | Machinery gene |
| Ahae5227_RS15525 (Ahae5227_15685) | coaE | 3222475..3223080 (+) | 606 | WP_017395818.1 | dephospho-CoA kinase | - |
| Ahae5227_RS15530 (Ahae5227_15690) | - | 3223077..3223988 (-) | 912 | WP_017394516.1 | DMT family transporter | - |
| Ahae5227_RS15535 (Ahae5227_15700) | rlmB | 3224028..3224774 (-) | 747 | WP_004637678.1 | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | - |
| Ahae5227_RS15540 (Ahae5227_15705) | - | 3224883..3225209 (-) | 327 | WP_004637677.1 | pyrimidine/purine nucleoside phosphorylase | - |
| Ahae5227_RS15545 (Ahae5227_15710) | recN | 3225543..3227204 (+) | 1662 | WP_008942279.1 | DNA repair protein RecN | - |
Sequence
Protein
Download Length: 285 a.a. Molecular weight: 31909.25 Da Isoelectric Point: 7.0009
>NTDB_id=313193 Ahae5227_RS17995 WP_008942282.1 3221616..3222473(+) (pilD) [Acinetobacter haemolyticus strain 5227]
MQQFLNYFIENPTALYLAVGLFSLCIGSFLNVVIFRTPKMMEQEWQQECQMLLHPEQPIIEEKLTLSQPASTCPKCHTPI
RWYQNIPVISWLVLRGKCGACQNPISIRYPLIELLTMGCSLVVVAVFGPTLQMLFGLVLTWVLITLTFIDFDTQLLPDRF
TLPLAALGLAINSFAIYTTANSAIWGYVIGFLCLWIVYYLFKIFTGKEGMGYGDFKLLAALGAWMGPMLLPLIVLLSSVV
GAIIGIILLKMRGENQPFAFGPYIAIAGWIAFLWGDQIMKVYLGG
MQQFLNYFIENPTALYLAVGLFSLCIGSFLNVVIFRTPKMMEQEWQQECQMLLHPEQPIIEEKLTLSQPASTCPKCHTPI
RWYQNIPVISWLVLRGKCGACQNPISIRYPLIELLTMGCSLVVVAVFGPTLQMLFGLVLTWVLITLTFIDFDTQLLPDRF
TLPLAALGLAINSFAIYTTANSAIWGYVIGFLCLWIVYYLFKIFTGKEGMGYGDFKLLAALGAWMGPMLLPLIVLLSSVV
GAIIGIILLKMRGENQPFAFGPYIAIAGWIAFLWGDQIMKVYLGG
Nucleotide
Download Length: 858 bp
>NTDB_id=313193 Ahae5227_RS17995 WP_008942282.1 3221616..3222473(+) (pilD) [Acinetobacter haemolyticus strain 5227]
ATGCAGCAATTCTTAAATTATTTTATCGAAAACCCAACTGCACTTTATCTTGCAGTTGGGCTTTTTAGTTTATGTATTGG
TAGCTTTCTGAATGTTGTTATTTTCCGAACGCCAAAAATGATGGAGCAGGAATGGCAACAAGAATGCCAAATGCTACTCC
ATCCAGAACAACCTATCATTGAAGAAAAGCTGACTTTAAGTCAACCCGCATCAACTTGCCCTAAGTGCCACACCCCTATC
CGCTGGTATCAAAATATCCCAGTGATCAGCTGGTTAGTACTCCGTGGTAAATGCGGTGCCTGTCAAAATCCGATTAGCAT
TCGTTACCCATTGATCGAGTTATTGACCATGGGGTGTTCTCTAGTGGTCGTTGCTGTTTTTGGTCCTACCCTCCAAATGC
TATTCGGTTTAGTTCTGACTTGGGTGTTAATTACCCTTACTTTTATTGATTTTGATACACAATTGCTTCCAGACCGCTTT
ACACTCCCATTGGCAGCACTCGGTTTAGCCATTAATAGTTTTGCGATCTACACCACAGCAAACTCAGCAATTTGGGGTTA
TGTGATTGGCTTCCTTTGCCTTTGGATTGTTTATTATCTTTTTAAAATATTTACTGGCAAAGAGGGTATGGGCTATGGCG
ATTTTAAATTACTGGCTGCATTAGGGGCTTGGATGGGCCCAATGCTGTTGCCTTTAATTGTGTTACTTTCTTCTGTTGTC
GGTGCAATTATTGGTATCATCTTATTGAAAATGCGCGGTGAAAATCAGCCCTTTGCTTTTGGCCCCTATATTGCAATTGC
AGGCTGGATCGCATTTTTATGGGGTGATCAAATTATGAAAGTTTATTTAGGTGGCTAA
ATGCAGCAATTCTTAAATTATTTTATCGAAAACCCAACTGCACTTTATCTTGCAGTTGGGCTTTTTAGTTTATGTATTGG
TAGCTTTCTGAATGTTGTTATTTTCCGAACGCCAAAAATGATGGAGCAGGAATGGCAACAAGAATGCCAAATGCTACTCC
ATCCAGAACAACCTATCATTGAAGAAAAGCTGACTTTAAGTCAACCCGCATCAACTTGCCCTAAGTGCCACACCCCTATC
CGCTGGTATCAAAATATCCCAGTGATCAGCTGGTTAGTACTCCGTGGTAAATGCGGTGCCTGTCAAAATCCGATTAGCAT
TCGTTACCCATTGATCGAGTTATTGACCATGGGGTGTTCTCTAGTGGTCGTTGCTGTTTTTGGTCCTACCCTCCAAATGC
TATTCGGTTTAGTTCTGACTTGGGTGTTAATTACCCTTACTTTTATTGATTTTGATACACAATTGCTTCCAGACCGCTTT
ACACTCCCATTGGCAGCACTCGGTTTAGCCATTAATAGTTTTGCGATCTACACCACAGCAAACTCAGCAATTTGGGGTTA
TGTGATTGGCTTCCTTTGCCTTTGGATTGTTTATTATCTTTTTAAAATATTTACTGGCAAAGAGGGTATGGGCTATGGCG
ATTTTAAATTACTGGCTGCATTAGGGGCTTGGATGGGCCCAATGCTGTTGCCTTTAATTGTGTTACTTTCTTCTGTTGTC
GGTGCAATTATTGGTATCATCTTATTGAAAATGCGCGGTGAAAATCAGCCCTTTGCTTTTGGCCCCTATATTGCAATTGC
AGGCTGGATCGCATTTTTATGGGGTGATCAAATTATGAAAGTTTATTTAGGTGGCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Acinetobacter nosocomialis M2 |
84.615 |
100 |
0.849 |
| pilD | Acinetobacter baumannii D1279779 |
84.266 |
100 |
0.846 |
| pilD | Vibrio cholerae strain A1552 |
56.343 |
94.035 |
0.53 |
| pilD | Vibrio campbellii strain DS40M4 |
55.431 |
93.684 |
0.519 |
| pilD | Neisseria gonorrhoeae MS11 |
46.52 |
95.789 |
0.446 |