Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | Ahae5227_RS00950 | Genome accession | NZ_CP031988 |
| Coordinates | 211935..212516 (+) | Length | 193 a.a. |
| NCBI ID | WP_004641476.1 | Uniprot ID | - |
| Organism | Acinetobacter haemolyticus strain 5227 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 211935..249285 | 211935..212516 | within | 0 |
Gene organization within MGE regions
Location: 211935..249285
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Ahae5227_RS00950 (Ahae5227_00960) | ssb | 211935..212516 (+) | 582 | WP_004641476.1 | single-stranded DNA-binding protein | Machinery gene |
| Ahae5227_RS00955 (Ahae5227_00965) | - | 212672..213898 (+) | 1227 | WP_125317031.1 | site-specific integrase | - |
| Ahae5227_RS00960 (Ahae5227_00970) | - | 213891..215447 (+) | 1557 | WP_160123836.1 | site-specific integrase | - |
| Ahae5227_RS00965 (Ahae5227_00975) | - | 215440..217566 (+) | 2127 | WP_125316906.1 | integrase | - |
| Ahae5227_RS00970 (Ahae5227_00980) | - | 217568..217984 (+) | 417 | WP_125316907.1 | hypothetical protein | - |
| Ahae5227_RS17730 | - | 218120..218278 (+) | 159 | WP_017396150.1 | hypothetical protein | - |
| Ahae5227_RS00975 (Ahae5227_00985) | - | 218253..218627 (+) | 375 | WP_125316908.1 | antitoxin Xre-like helix-turn-helix domain-containing protein | - |
| Ahae5227_RS00980 (Ahae5227_00990) | - | 218694..218873 (+) | 180 | WP_125316909.1 | hypothetical protein | - |
| Ahae5227_RS00985 (Ahae5227_00995) | - | 219130..224136 (+) | 5007 | WP_160123837.1 | DEAD/DEAH box helicase | - |
| Ahae5227_RS00990 (Ahae5227_01005) | - | 224850..225989 (+) | 1140 | WP_160123838.1 | reverse transcriptase domain-containing protein | - |
| Ahae5227_RS00995 (Ahae5227_01010) | - | 225997..226929 (+) | 933 | WP_017396695.1 | IS5-like element IS17 family transposase | - |
| Ahae5227_RS01000 (Ahae5227_01015) | - | 227026..227577 (-) | 552 | WP_107908897.1 | recombinase family protein | - |
| Ahae5227_RS01005 (Ahae5227_01020) | - | 228011..228613 (+) | 603 | WP_228199524.1 | helix-turn-helix domain-containing protein | - |
| Ahae5227_RS01010 (Ahae5227_01025) | - | 228689..229351 (+) | 663 | Protein_196 | amino acid permease | - |
| Ahae5227_RS01015 (Ahae5227_01030) | - | 229409..230911 (-) | 1503 | WP_008941075.1 | PLP-dependent aminotransferase family protein | - |
| Ahae5227_RS01020 (Ahae5227_01035) | gabT | 231066..232358 (+) | 1293 | WP_008941076.1 | 4-aminobutyrate--2-oxoglutarate transaminase | - |
| Ahae5227_RS01025 (Ahae5227_01040) | - | 232355..233803 (+) | 1449 | WP_008941077.1 | NAD-dependent succinate-semialdehyde dehydrogenase | - |
| Ahae5227_RS01030 (Ahae5227_01045) | - | 233866..234846 (-) | 981 | WP_171057917.1 | LysR substrate-binding domain-containing protein | - |
| Ahae5227_RS01035 (Ahae5227_01050) | ycaC | 234870..235496 (-) | 627 | WP_004641467.1 | isochorismate family cysteine hydrolase YcaC | - |
| Ahae5227_RS01040 (Ahae5227_01055) | - | 235782..236642 (+) | 861 | WP_005088628.1 | pirin family protein | - |
| Ahae5227_RS01045 (Ahae5227_01060) | - | 237078..238376 (+) | 1299 | WP_005088626.1 | FAD-dependent oxidoreductase | - |
| Ahae5227_RS01050 (Ahae5227_01065) | - | 238378..239205 (+) | 828 | WP_008941079.1 | SAM-dependent methyltransferase | - |
| Ahae5227_RS17845 (Ahae5227_01075) | - | 239395..239548 (+) | 154 | Protein_205 | HNH endonuclease | - |
| Ahae5227_RS01060 (Ahae5227_01080) | - | 239646..240560 (+) | 915 | WP_005088619.1 | GIY-YIG nuclease family protein | - |
| Ahae5227_RS01065 (Ahae5227_01085) | - | 240815..241006 (+) | 192 | WP_017396511.1 | type I restriction enzyme HsdR N-terminal domain-containing protein | - |
| Ahae5227_RS01070 (Ahae5227_01090) | - | 241074..242233 (+) | 1160 | WP_118901380.1 | IS3 family transposase | - |
| Ahae5227_RS01075 (Ahae5227_01095) | - | 242618..242862 (-) | 245 | Protein_209 | transposase domain-containing protein | - |
| Ahae5227_RS01080 (Ahae5227_01100) | - | 242948..243385 (-) | 438 | WP_005088612.1 | hypothetical protein | - |
| Ahae5227_RS01085 (Ahae5227_01105) | - | 243382..245118 (-) | 1737 | WP_267313199.1 | DEAD/DEAH box helicase | - |
| Ahae5227_RS01090 (Ahae5227_01110) | - | 245227..245928 (+) | 702 | WP_004678526.1 | IS1-like element ISPa14 family transposase | - |
| Ahae5227_RS01095 (Ahae5227_01115) | - | 246144..246485 (-) | 342 | WP_216071389.1 | hypothetical protein | - |
| Ahae5227_RS01100 (Ahae5227_01120) | - | 246527..247617 (+) | 1091 | WP_076612069.1 | IS4-like element ISAba33 family transposase | - |
| Ahae5227_RS01105 (Ahae5227_01125) | - | 247612..247818 (-) | 207 | WP_171503385.1 | hypothetical protein | - |
| Ahae5227_RS01110 (Ahae5227_01130) | - | 248086..249285 (-) | 1200 | WP_017396498.1 | tyrosine-type recombinase/integrase | - |
Sequence
Protein
Download Length: 193 a.a. Molecular weight: 21211.89 Da Isoelectric Point: 6.7311
>NTDB_id=313154 Ahae5227_RS00950 WP_004641476.1 211935..212516(+) (ssb) [Acinetobacter haemolyticus strain 5227]
MRGVNKVILVGTLGKDPETKTFPNGGSLTQFSIATSESWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYSTEIRGDQMQMLDSRQQSEQSGGDFNQPRFNNNQGGGYQNTGHNNNQNGYGQGGGFNGGNQGNY
AGNPQAGNGFNTPKSAPQPAATAPADLDDDLPF
MRGVNKVILVGTLGKDPETKTFPNGGSLTQFSIATSESWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYSTEIRGDQMQMLDSRQQSEQSGGDFNQPRFNNNQGGGYQNTGHNNNQNGYGQGGGFNGGNQGNY
AGNPQAGNGFNTPKSAPQPAATAPADLDDDLPF
Nucleotide
Download Length: 582 bp
>NTDB_id=313154 Ahae5227_RS00950 WP_004641476.1 211935..212516(+) (ssb) [Acinetobacter haemolyticus strain 5227]
ATGCGTGGTGTGAATAAAGTTATTTTAGTCGGTACTTTGGGTAAAGATCCAGAAACAAAGACTTTTCCGAATGGTGGCTC
GCTAACACAGTTCTCGATTGCAACAAGTGAATCGTGGACAGATAAAAATACAGGCGAACGTAAAGAGCAAACAGAGTGGC
ATCGTATTGTATTGCATAACCGTTTAGGTGAAATTGCACAGCAATATCTTCGCAAAGGTTCTAAAGTCTATATCGAAGGT
TCACTACGTACCCGTCAATGGACTGACCAAAATGGTCAAGAGCGCTACAGCACTGAAATTCGCGGTGATCAAATGCAAAT
GCTTGATTCACGTCAGCAAAGTGAACAAAGCGGTGGTGATTTCAATCAACCACGTTTTAACAATAATCAAGGCGGTGGTT
ACCAAAATACAGGTCATAACAACAATCAAAATGGTTATGGTCAAGGTGGTGGTTTTAATGGTGGTAATCAAGGCAATTAT
GCAGGCAATCCACAAGCGGGTAATGGTTTTAATACACCAAAGTCTGCACCACAACCTGCTGCGACAGCACCTGCTGATTT
AGATGATGATTTGCCATTCTGA
ATGCGTGGTGTGAATAAAGTTATTTTAGTCGGTACTTTGGGTAAAGATCCAGAAACAAAGACTTTTCCGAATGGTGGCTC
GCTAACACAGTTCTCGATTGCAACAAGTGAATCGTGGACAGATAAAAATACAGGCGAACGTAAAGAGCAAACAGAGTGGC
ATCGTATTGTATTGCATAACCGTTTAGGTGAAATTGCACAGCAATATCTTCGCAAAGGTTCTAAAGTCTATATCGAAGGT
TCACTACGTACCCGTCAATGGACTGACCAAAATGGTCAAGAGCGCTACAGCACTGAAATTCGCGGTGATCAAATGCAAAT
GCTTGATTCACGTCAGCAAAGTGAACAAAGCGGTGGTGATTTCAATCAACCACGTTTTAACAATAATCAAGGCGGTGGTT
ACCAAAATACAGGTCATAACAACAATCAAAATGGTTATGGTCAAGGTGGTGGTTTTAATGGTGGTAATCAAGGCAATTAT
GCAGGCAATCCACAAGCGGGTAATGGTTTTAATACACCAAAGTCTGCACCACAACCTGCTGCGACAGCACCTGCTGATTT
AGATGATGATTTGCCATTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
53 |
100 |
0.549 |
| ssb | Vibrio cholerae strain A1552 |
44.335 |
100 |
0.466 |
| ssb | Neisseria meningitidis MC58 |
38.421 |
98.446 |
0.378 |
| ssb | Neisseria gonorrhoeae MS11 |
38.421 |
98.446 |
0.378 |