Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   AhaeAN3_RS12160 Genome accession   NZ_CP031984
Coordinates   2561942..2562370 (-) Length   142 a.a.
NCBI ID   WP_160127275.1    Uniprot ID   A0AAJ2YRV4
Organism   Acinetobacter haemolyticus strain AN3     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2556942..2567370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AhaeAN3_RS12130 (AhaeAN3_12180) - 2557019..2557288 (-) 270 WP_004637957.1 HPr family phosphocarrier protein -
  AhaeAN3_RS12135 (AhaeAN3_12185) rapZ 2557285..2558136 (-) 852 WP_004637956.1 RNase adapter RapZ -
  AhaeAN3_RS12140 (AhaeAN3_12190) panC 2558165..2559010 (-) 846 WP_160127271.1 pantoate--beta-alanine ligase -
  AhaeAN3_RS12145 (AhaeAN3_12195) panB 2559014..2559823 (-) 810 WP_160127272.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  AhaeAN3_RS12150 (AhaeAN3_12200) folK 2559863..2560351 (-) 489 WP_160127273.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  AhaeAN3_RS12155 (AhaeAN3_12205) pcnB 2560348..2561802 (-) 1455 WP_160127274.1 polynucleotide adenylyltransferase PcnB -
  AhaeAN3_RS12160 (AhaeAN3_12210) comEA 2561942..2562370 (-) 429 WP_160127275.1 ComEA family DNA-binding protein Machinery gene
  AhaeAN3_RS12165 (AhaeAN3_12215) mazG 2562339..2563145 (-) 807 WP_160127276.1 nucleoside triphosphate pyrophosphohydrolase -
  AhaeAN3_RS12170 (AhaeAN3_12220) - 2563239..2564012 (+) 774 WP_160127277.1 SDR family oxidoreductase -
  AhaeAN3_RS12175 (AhaeAN3_12225) - 2564089..2565183 (-) 1095 WP_160127278.1 tetratricopeptide repeat protein -
  AhaeAN3_RS12180 (AhaeAN3_12230) - 2565235..2565720 (-) 486 WP_160127279.1 DUF2799 domain-containing protein -
  AhaeAN3_RS12185 (AhaeAN3_12235) - 2565856..2566539 (-) 684 WP_160127280.1 hypothetical protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16001.24 Da        Isoelectric Point: 10.2250

>NTDB_id=313140 AhaeAN3_RS12160 WP_160127275.1 2561942..2562370(-) (comEA) [Acinetobacter haemolyticus strain AN3]
MTLPQPHSKHNAILFILLCLGCFSHVHAQQFDQSYDQWKAQQQARDQQLAKQPNNNYYLSRPTQQTSSKPVSSSVNQQGD
KISLNQANVQQLQTLIGVGEKKAQAIVEYRQKNGGFKTVDELVNVKGIGPKLLEKNKARLML

Nucleotide


Download         Length: 429 bp        

>NTDB_id=313140 AhaeAN3_RS12160 WP_160127275.1 2561942..2562370(-) (comEA) [Acinetobacter haemolyticus strain AN3]
ATGACTTTGCCACAGCCGCACAGCAAACATAACGCTATTTTATTTATCCTTTTATGTTTGGGATGTTTTTCTCATGTGCA
TGCACAGCAGTTTGACCAGTCTTATGATCAGTGGAAAGCCCAGCAGCAGGCACGGGATCAGCAGTTGGCGAAACAGCCTA
ACAACAATTATTATCTATCACGTCCAACACAGCAAACCAGCTCAAAGCCTGTTTCATCTTCTGTAAATCAGCAGGGTGAT
AAAATTAGCCTAAATCAGGCAAATGTACAGCAGTTACAGACCCTGATTGGTGTGGGTGAGAAAAAGGCACAGGCTATTGT
GGAATATCGCCAGAAGAATGGTGGGTTTAAAACAGTTGATGAACTGGTGAATGTGAAAGGGATTGGGCCAAAATTGCTGG
AGAAAAACAAGGCACGGCTGATGCTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(78-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

51.471

95.775

0.493
  comEA Acinetobacter baumannii D1279779

47.552

100

0.479
  comEA Acinetobacter baylyi ADP1

47.059

95.775

0.451

Multiple sequence alignment