Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AhaeAN4_RS00940 Genome accession   NZ_CP031979
Coordinates   207091..207672 (+) Length   193 a.a.
NCBI ID   WP_004641476.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain AN4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 195124..228487 207091..207672 within 0


Gene organization within MGE regions


Location: 195124..228487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AhaeAN4_RS00895 (AhaeAN4_00905) - 195124..196776 (+) 1653 WP_160132014.1 NTPase -
  AhaeAN4_RS00905 (AhaeAN4_00915) - 198114..199271 (-) 1158 WP_008942576.1 IS4 family transposase -
  AhaeAN4_RS00910 (AhaeAN4_00920) uvrA 199390..202221 (-) 2832 WP_005088654.1 excinuclease ABC subunit UvrA -
  AhaeAN4_RS00915 (AhaeAN4_00925) - 202481..203053 (+) 573 WP_017396722.1 DUF2939 domain-containing protein -
  AhaeAN4_RS00920 (AhaeAN4_00930) - 203109..203462 (+) 354 WP_004641483.1 DUF1304 domain-containing protein -
  AhaeAN4_RS00925 (AhaeAN4_00935) tenA 203614..204288 (-) 675 WP_008941060.1 thiaminase II -
  AhaeAN4_RS00930 (AhaeAN4_00940) - 204461..205543 (+) 1083 WP_160132015.1 DUF475 domain-containing protein -
  AhaeAN4_RS00935 (AhaeAN4_00945) - 205675..207039 (+) 1365 WP_004641478.1 MFS transporter -
  AhaeAN4_RS00940 (AhaeAN4_00950) ssb 207091..207672 (+) 582 WP_004641476.1 single-stranded DNA-binding protein Machinery gene
  AhaeAN4_RS00945 (AhaeAN4_00960) - 208073..209506 (+) 1434 WP_017396719.1 amino acid permease -
  AhaeAN4_RS00950 (AhaeAN4_00965) - 209564..211066 (-) 1503 WP_008941075.1 PLP-dependent aminotransferase family protein -
  AhaeAN4_RS00955 (AhaeAN4_00970) gabT 211221..212513 (+) 1293 WP_008941076.1 4-aminobutyrate--2-oxoglutarate transaminase -
  AhaeAN4_RS00960 (AhaeAN4_00975) - 212510..213958 (+) 1449 WP_008941077.1 NAD-dependent succinate-semialdehyde dehydrogenase -
  AhaeAN4_RS00965 (AhaeAN4_00980) - 214021..215001 (-) 981 WP_171057917.1 LysR substrate-binding domain-containing protein -
  AhaeAN4_RS00970 (AhaeAN4_00985) ycaC 215025..215651 (-) 627 WP_004641467.1 isochorismate family cysteine hydrolase YcaC -
  AhaeAN4_RS00975 (AhaeAN4_00990) - 215937..216797 (+) 861 WP_005088628.1 pirin family protein -
  AhaeAN4_RS00980 (AhaeAN4_00995) - 217233..218531 (+) 1299 WP_005088626.1 FAD-dependent oxidoreductase -
  AhaeAN4_RS00985 (AhaeAN4_01000) - 218533..219360 (+) 828 WP_008941079.1 SAM-dependent methyltransferase -
  AhaeAN4_RS18120 (AhaeAN4_01010) - 219550..219703 (+) 154 Protein_192 HNH endonuclease -
  AhaeAN4_RS00995 (AhaeAN4_01015) - 219801..220715 (+) 915 WP_005088619.1 GIY-YIG nuclease family protein -
  AhaeAN4_RS01000 (AhaeAN4_01020) - 221003..221161 (+) 159 WP_008941082.1 type I restriction enzyme HsdR N-terminal domain-containing protein -
  AhaeAN4_RS01005 (AhaeAN4_01025) - 221229..222388 (+) 1160 WP_118901380.1 IS3 family transposase -
  AhaeAN4_RS01010 (AhaeAN4_01030) - 222773..223017 (-) 245 Protein_196 transposase domain-containing protein -
  AhaeAN4_RS01015 (AhaeAN4_01035) - 223103..223540 (-) 438 WP_005088612.1 hypothetical protein -
  AhaeAN4_RS01020 (AhaeAN4_01040) - 223537..224892 (-) 1356 WP_228277854.1 DEAD/DEAH box helicase -
  AhaeAN4_RS01025 (AhaeAN4_01045) - 224908..225837 (+) 930 WP_005274609.1 IS5-like element ISAba10 family transposase -
  AhaeAN4_RS01030 (AhaeAN4_01050) - 225871..226431 (-) 561 WP_216071441.1 DEAD/DEAH box helicase family protein -
  AhaeAN4_RS01035 (AhaeAN4_01055) - 226535..227020 (-) 486 WP_160124150.1 hypothetical protein -
  AhaeAN4_RS01040 (AhaeAN4_01060) - 227288..228487 (-) 1200 WP_017396498.1 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21211.89 Da        Isoelectric Point: 6.7311

>NTDB_id=313069 AhaeAN4_RS00940 WP_004641476.1 207091..207672(+) (ssb) [Acinetobacter haemolyticus strain AN4]
MRGVNKVILVGTLGKDPETKTFPNGGSLTQFSIATSESWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYSTEIRGDQMQMLDSRQQSEQSGGDFNQPRFNNNQGGGYQNTGHNNNQNGYGQGGGFNGGNQGNY
AGNPQAGNGFNTPKSAPQPAATAPADLDDDLPF

Nucleotide


Download         Length: 582 bp        

>NTDB_id=313069 AhaeAN4_RS00940 WP_004641476.1 207091..207672(+) (ssb) [Acinetobacter haemolyticus strain AN4]
ATGCGTGGTGTGAATAAAGTTATTTTAGTCGGTACTTTGGGTAAAGATCCAGAAACAAAGACTTTTCCGAATGGTGGCTC
GCTAACACAGTTCTCGATTGCAACAAGTGAATCGTGGACAGATAAAAATACAGGCGAACGTAAAGAGCAAACAGAGTGGC
ATCGTATTGTATTGCATAACCGTTTAGGTGAAATTGCACAGCAATATCTTCGCAAAGGTTCTAAAGTCTATATCGAAGGT
TCACTACGTACCCGTCAATGGACTGACCAAAATGGTCAAGAGCGCTACAGCACTGAAATTCGCGGTGATCAAATGCAAAT
GCTTGATTCACGTCAGCAAAGTGAACAAAGCGGTGGTGATTTCAATCAACCACGTTTTAACAATAATCAAGGCGGTGGTT
ACCAAAATACAGGTCATAACAACAATCAAAATGGTTATGGTCAAGGTGGTGGTTTTAATGGTGGTAATCAAGGCAATTAT
GCAGGCAATCCACAAGCGGGTAATGGTTTTAATACACCAAAGTCTGCACCACAACCTGCTGCGACAGCACCTGCTGATTT
AGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

53

100

0.549
  ssb Vibrio cholerae strain A1552

44.335

100

0.466
  ssb Neisseria meningitidis MC58

38.421

98.446

0.378
  ssb Neisseria gonorrhoeae MS11

38.421

98.446

0.378

Multiple sequence alignment