Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   D1820_RS03055 Genome accession   NZ_CP031956
Coordinates   616771..617301 (-) Length   176 a.a.
NCBI ID   WP_118067836.1    Uniprot ID   -
Organism   Phaeobacter sp. LSS9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 611771..622301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1820_RS19050 - 612169..612318 (-) 150 WP_014874523.1 hypothetical protein -
  D1820_RS03040 (D1820_03040) - 612399..612989 (+) 591 WP_118067834.1 shikimate kinase -
  D1820_RS03045 (D1820_03045) aroB 613003..614130 (+) 1128 WP_371311710.1 3-dehydroquinate synthase -
  D1820_RS03050 (D1820_03050) - 614278..616497 (-) 2220 WP_118067835.1 methyl-accepting chemotaxis protein -
  D1820_RS03055 (D1820_03055) ssb 616771..617301 (-) 531 WP_118067836.1 single-stranded DNA-binding protein Machinery gene
  D1820_RS03060 (D1820_03060) - 617645..618229 (+) 585 WP_024097408.1 lytic transglycosylase domain-containing protein -
  D1820_RS03065 (D1820_03065) - 618515..618889 (+) 375 WP_118067837.1 hypothetical protein -
  D1820_RS03070 (D1820_03070) - 618936..621023 (-) 2088 WP_118069998.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18291.83 Da        Isoelectric Point: 5.7802

>NTDB_id=312873 D1820_RS03055 WP_118067836.1 616771..617301(-) (ssb) [Phaeobacter sp. LSS9]
MAGSVNKVILIGNLGRDPEVRSFQNGGKVCNLRIATSETWKDRNTGERREKTEWHSVAIFSEGLVRVAEQYLRKGSKVYI
EGQLQTRKWQDQSGQDRYSTEVVLQGIGGTLTMLDGRNDGGQGGGGGSYGGGSGGGYGGGGGGYDSGQGGGNQGGGFGGG
NQGGASHNIDDDEIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=312873 D1820_RS03055 WP_118067836.1 616771..617301(-) (ssb) [Phaeobacter sp. LSS9]
ATGGCAGGCTCAGTCAACAAAGTAATCCTGATCGGCAACCTCGGCCGTGATCCCGAAGTGCGCAGTTTCCAGAACGGCGG
CAAGGTCTGCAACCTGCGGATCGCCACCTCGGAAACCTGGAAAGACCGCAACACCGGCGAGCGGCGCGAAAAAACCGAAT
GGCATTCGGTTGCGATCTTCTCCGAAGGTCTGGTCCGCGTGGCAGAGCAGTACCTGCGCAAAGGCTCCAAGGTCTATATC
GAAGGCCAGTTGCAGACCCGCAAATGGCAGGACCAGAGCGGCCAAGACCGCTATTCGACCGAGGTCGTCCTGCAGGGCAT
CGGCGGCACGCTGACCATGCTCGATGGTCGCAATGACGGCGGCCAGGGCGGCGGCGGTGGCAGCTACGGTGGTGGCAGCG
GCGGCGGCTATGGTGGTGGCGGTGGTGGCTACGACAGCGGTCAGGGTGGCGGCAATCAGGGCGGTGGCTTTGGCGGCGGC
AACCAGGGCGGCGCATCGCACAACATCGATGATGACGAGATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.757

98.295

0.528
  ssb Glaesserella parasuis strain SC1401

47.396

100

0.517
  ssb Neisseria gonorrhoeae MS11

40.642

100

0.432
  ssb Neisseria meningitidis MC58

40.642

100

0.432

Multiple sequence alignment