Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | E4U83_RS25675 | Genome accession | NZ_CP038355 |
| Coordinates | 5140187..5140723 (-) | Length | 178 a.a. |
| NCBI ID | WP_000168305.1 | Uniprot ID | A0A370V115 |
| Organism | Escherichia coli O157:H7 str. F8092B | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 5135187..5145723
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E4U83_RS25655 (E4U83_26455) | soxR | 5136916..5137380 (-) | 465 | WP_000412428.1 | redox-sensitive transcriptional activator SoxR | - |
| E4U83_RS25660 (E4U83_26460) | soxS | 5137466..5137789 (+) | 324 | WP_000019358.1 | superoxide response transcriptional regulator SoxS | - |
| E4U83_RS25665 (E4U83_26465) | pdeC | 5137792..5139378 (-) | 1587 | WP_001016522.1 | c-di-GMP phosphodiesterase PdeC | - |
| E4U83_RS25670 (E4U83_26470) | yjcB | 5139807..5140088 (+) | 282 | WP_001295689.1 | YjcB family protein | - |
| E4U83_RS25675 (E4U83_26475) | ssb | 5140187..5140723 (-) | 537 | WP_000168305.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| E4U83_RS25680 (E4U83_26480) | uvrA | 5140978..5143800 (+) | 2823 | WP_000357763.1 | excinuclease ABC subunit UvrA | Machinery gene |
| E4U83_RS25685 (E4U83_26485) | yjbR | 5143835..5144191 (-) | 357 | WP_000155657.1 | MmcQ/YjbR family DNA-binding protein | - |
| E4U83_RS25690 (E4U83_26490) | yjbQ | 5144195..5144611 (-) | 417 | WP_000270375.1 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
| E4U83_RS25695 (E4U83_26495) | aphA | 5144722..5145435 (-) | 714 | WP_001226923.1 | acid phosphatase AphA | - |
Sequence
Protein
Download Length: 178 a.a. Molecular weight: 18975.00 Da Isoelectric Point: 5.2358
>NTDB_id=312867 E4U83_RS25675 WP_000168305.1 5140187..5140723(-) (ssb) [Escherichia coli O157:H7 str. F8092B]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF
Nucleotide
Download Length: 537 bp
>NTDB_id=312867 E4U83_RS25675 WP_000168305.1 5140187..5140723(-) (ssb) [Escherichia coli O157:H7 str. F8092B]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
74.444 |
100 |
0.753 |
| ssb | Glaesserella parasuis strain SC1401 |
57.923 |
100 |
0.596 |
| ssb | Neisseria meningitidis MC58 |
48.066 |
100 |
0.489 |
| ssb | Neisseria gonorrhoeae MS11 |
48.066 |
100 |
0.489 |