Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | PAES_RS09800 | Genome accession | NC_011059 |
| Coordinates | 2146178..2146678 (+) | Length | 166 a.a. |
| NCBI ID | WP_012506509.1 | Uniprot ID | A0A369R3Z2 |
| Organism | Prosthecochloris aestuarii DSM 271 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2141178..2151678
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PAES_RS09780 (Paes_1960) | - | 2142880..2143125 (-) | 246 | WP_012506505.1 | bacteriochlorophyll c-binding family protein | - |
| PAES_RS09785 (Paes_1961) | - | 2143260..2143679 (-) | 420 | WP_012506506.1 | chlorosome protein C | - |
| PAES_RS09790 (Paes_1962) | - | 2143808..2145025 (-) | 1218 | WP_012506507.1 | TRC40/GET3/ArsA family transport-energizing ATPase | - |
| PAES_RS09795 (Paes_1963) | - | 2145326..2146123 (+) | 798 | WP_012506508.1 | dihydroorotate dehydrogenase electron transfer subunit | - |
| PAES_RS09800 (Paes_1964) | ssb | 2146178..2146678 (+) | 501 | WP_012506509.1 | single-stranded DNA-binding protein | Machinery gene |
| PAES_RS09805 (Paes_1965) | holA | 2146748..2147797 (+) | 1050 | WP_012506510.1 | DNA polymerase III subunit delta | - |
| PAES_RS09810 (Paes_1966) | - | 2147807..2148802 (-) | 996 | WP_012506511.1 | NAD(P)-dependent oxidoreductase | - |
| PAES_RS09815 (Paes_1967) | - | 2149119..2150321 (+) | 1203 | WP_012506512.1 | pyridoxal phosphate-dependent aminotransferase family protein | - |
Sequence
Protein
Download Length: 166 a.a. Molecular weight: 17974.82 Da Isoelectric Point: 6.4649
>NTDB_id=31263 PAES_RS09800 WP_012506509.1 2146178..2146678(+) (ssb) [Prosthecochloris aestuarii DSM 271]
MARGLNKVMLIGHLGSDPELRVIPSGQSVANFTLATNESYKDSSGNLQERTEWHRIVAWGRLAEICQQYLKKGRQVYIEG
KLQTRSWDDTKTGDKRYATEIVCSDMQMLGSAREGGVPQGGGNNAQYSQSGGGYSTPSSQPQQGGYQGSAASGSQAPEPD
KDDLPF
MARGLNKVMLIGHLGSDPELRVIPSGQSVANFTLATNESYKDSSGNLQERTEWHRIVAWGRLAEICQQYLKKGRQVYIEG
KLQTRSWDDTKTGDKRYATEIVCSDMQMLGSAREGGVPQGGGNNAQYSQSGGGYSTPSSQPQQGGYQGSAASGSQAPEPD
KDDLPF
Nucleotide
Download Length: 501 bp
>NTDB_id=31263 PAES_RS09800 WP_012506509.1 2146178..2146678(+) (ssb) [Prosthecochloris aestuarii DSM 271]
ATGGCACGCGGACTCAATAAAGTAATGCTTATCGGACACCTCGGAAGCGACCCCGAACTCAGGGTCATCCCGTCAGGACA
GTCAGTTGCCAATTTCACGCTGGCAACCAACGAAAGTTACAAAGACAGCTCCGGCAACCTTCAGGAACGGACCGAATGGC
ACCGAATTGTCGCCTGGGGAAGACTTGCCGAAATCTGCCAGCAGTACCTTAAGAAAGGCCGTCAGGTCTATATCGAAGGA
AAACTCCAGACCCGCAGCTGGGACGACACCAAAACCGGAGACAAACGCTATGCAACGGAAATCGTCTGCAGCGACATGCA
GATGCTCGGCTCAGCCCGCGAAGGAGGTGTTCCCCAGGGGGGAGGCAACAACGCCCAGTATAGCCAGAGCGGCGGTGGAT
ACAGCACCCCCTCTTCCCAGCCCCAACAGGGCGGTTATCAGGGTTCTGCCGCTTCAGGCTCCCAGGCACCGGAACCCGAC
AAGGACGATCTGCCATTCTAA
ATGGCACGCGGACTCAATAAAGTAATGCTTATCGGACACCTCGGAAGCGACCCCGAACTCAGGGTCATCCCGTCAGGACA
GTCAGTTGCCAATTTCACGCTGGCAACCAACGAAAGTTACAAAGACAGCTCCGGCAACCTTCAGGAACGGACCGAATGGC
ACCGAATTGTCGCCTGGGGAAGACTTGCCGAAATCTGCCAGCAGTACCTTAAGAAAGGCCGTCAGGTCTATATCGAAGGA
AAACTCCAGACCCGCAGCTGGGACGACACCAAAACCGGAGACAAACGCTATGCAACGGAAATCGTCTGCAGCGACATGCA
GATGCTCGGCTCAGCCCGCGAAGGAGGTGTTCCCCAGGGGGGAGGCAACAACGCCCAGTATAGCCAGAGCGGCGGTGGAT
ACAGCACCCCCTCTTCCCAGCCCCAACAGGGCGGTTATCAGGGTTCTGCCGCTTCAGGCTCCCAGGCACCGGAACCCGAC
AAGGACGATCTGCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
47.159 |
100 |
0.5 |
| ssb | Glaesserella parasuis strain SC1401 |
43.094 |
100 |
0.47 |
| ssb | Neisseria gonorrhoeae MS11 |
42.938 |
100 |
0.458 |
| ssb | Neisseria meningitidis MC58 |
42.938 |
100 |
0.458 |