Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | D1101_RS04795 | Genome accession | NZ_CP031866 |
| Coordinates | 1033852..1034298 (-) | Length | 148 a.a. |
| NCBI ID | WP_005597397.1 | Uniprot ID | B0BPG5 |
| Organism | Actinobacillus pleuropneumoniae serovar 8 str. 405 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1028852..1039298
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D1101_RS04770 (D1101_04800) | yacG | 1029759..1029947 (-) | 189 | WP_005597388.1 | DNA gyrase inhibitor YacG | - |
| D1101_RS04775 (D1101_04805) | coaE | 1029929..1030567 (-) | 639 | WP_005601202.1 | dephospho-CoA kinase | - |
| D1101_RS04780 (D1101_04810) | - | 1030589..1031227 (-) | 639 | WP_005604550.1 | prepilin peptidase | - |
| D1101_RS04785 (D1101_04815) | pilC | 1031254..1032456 (-) | 1203 | WP_218633985.1 | type II secretion system F family protein | Machinery gene |
| D1101_RS04790 (D1101_04820) | pilB | 1032440..1033834 (-) | 1395 | WP_005601209.1 | GspE/PulE family protein | Machinery gene |
| D1101_RS04795 (D1101_04825) | pilA | 1033852..1034298 (-) | 447 | WP_005597397.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| D1101_RS04800 (D1101_04830) | radA | 1034480..1035859 (+) | 1380 | WP_005601211.1 | DNA repair protein RadA | Machinery gene |
| D1101_RS04805 (D1101_04835) | - | 1035903..1036136 (-) | 234 | WP_005597399.1 | YgjV family protein | - |
| D1101_RS04810 (D1101_04840) | - | 1036263..1036751 (-) | 489 | WP_218633986.1 | dihydrofolate reductase | - |
| D1101_RS04815 (D1101_04845) | proB | 1036838..1037929 (+) | 1092 | WP_005601213.1 | glutamate 5-kinase | - |
| D1101_RS04820 (D1101_04850) | - | 1037942..1038718 (+) | 777 | WP_005597402.1 | TSUP family transporter | - |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 15980.38 Da Isoelectric Point: 7.6257
>NTDB_id=312181 D1101_RS04795 WP_005597397.1 1033852..1034298(-) (pilA) [Actinobacillus pleuropneumoniae serovar 8 str. 405]
MQKLSLIRPLTNAFTLIELMIVIAIIAILATVAIPSYNSYTQKAALSELLAASASYKTDVEICIYNTGDSKNCSGGQNGV
RKMTELRQAKYLNAITVEGGTITVTGKGNLQEYGYTMTPIHNGSTISWETKCKGEDLSLFPANFCASN
MQKLSLIRPLTNAFTLIELMIVIAIIAILATVAIPSYNSYTQKAALSELLAASASYKTDVEICIYNTGDSKNCSGGQNGV
RKMTELRQAKYLNAITVEGGTITVTGKGNLQEYGYTMTPIHNGSTISWETKCKGEDLSLFPANFCASN
Nucleotide
Download Length: 447 bp
>NTDB_id=312181 D1101_RS04795 WP_005597397.1 1033852..1034298(-) (pilA) [Actinobacillus pleuropneumoniae serovar 8 str. 405]
ATGCAAAAACTAAGTCTTATTCGACCGCTTACTAACGCGTTTACTTTAATTGAATTGATGATCGTGATTGCGATTATTGC
CATTTTAGCTACGGTTGCAATTCCGTCATATAACAGTTATACCCAAAAAGCGGCGCTTTCGGAGCTATTGGCGGCATCGG
CTTCTTATAAAACGGATGTCGAGATCTGCATATATAACACCGGAGATTCTAAAAACTGTAGCGGCGGTCAAAACGGTGTC
AGAAAAATGACGGAGCTTAGACAGGCTAAATATTTAAATGCCATTACGGTGGAAGGCGGAACGATTACGGTAACGGGGAA
AGGGAATCTACAGGAATACGGTTATACGATGACACCGATTCATAACGGTAGCACTATTTCTTGGGAAACGAAATGTAAAG
GGGAGGACTTAAGTTTATTTCCGGCAAATTTCTGCGCATCAAATTAA
ATGCAAAAACTAAGTCTTATTCGACCGCTTACTAACGCGTTTACTTTAATTGAATTGATGATCGTGATTGCGATTATTGC
CATTTTAGCTACGGTTGCAATTCCGTCATATAACAGTTATACCCAAAAAGCGGCGCTTTCGGAGCTATTGGCGGCATCGG
CTTCTTATAAAACGGATGTCGAGATCTGCATATATAACACCGGAGATTCTAAAAACTGTAGCGGCGGTCAAAACGGTGTC
AGAAAAATGACGGAGCTTAGACAGGCTAAATATTTAAATGCCATTACGGTGGAAGGCGGAACGATTACGGTAACGGGGAA
AGGGAATCTACAGGAATACGGTTATACGATGACACCGATTCATAACGGTAGCACTATTTCTTGGGAAACGAAATGTAAAG
GGGAGGACTTAAGTTTATTTCCGGCAAATTTCTGCGCATCAAATTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Glaesserella parasuis strain SC1401 |
68.919 |
100 |
0.689 |
| pilA | Haemophilus influenzae 86-028NP |
55.102 |
99.324 |
0.547 |
| pilA | Haemophilus influenzae Rd KW20 |
53.061 |
99.324 |
0.527 |