Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | D1107_RS04315 | Genome accession | NZ_CP031860 |
| Coordinates | 968808..969254 (-) | Length | 148 a.a. |
| NCBI ID | WP_005597397.1 | Uniprot ID | B0BPG5 |
| Organism | Actinobacillus pleuropneumoniae strain 3906 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 963808..974254
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D1107_RS04290 (D1107_04330) | yacG | 964715..964903 (-) | 189 | WP_237593094.1 | DNA gyrase inhibitor YacG | - |
| D1107_RS04295 (D1107_04335) | coaE | 964885..965523 (-) | 639 | WP_005601202.1 | dephospho-CoA kinase | - |
| D1107_RS04300 (D1107_04340) | - | 965545..966183 (-) | 639 | WP_005604550.1 | prepilin peptidase | - |
| D1107_RS04305 (D1107_04345) | pilC | 966210..967412 (-) | 1203 | WP_237593095.1 | type II secretion system F family protein | Machinery gene |
| D1107_RS04310 (D1107_04350) | pilB | 967396..968790 (-) | 1395 | WP_005601209.1 | GspE/PulE family protein | Machinery gene |
| D1107_RS04315 (D1107_04355) | pilA | 968808..969254 (-) | 447 | WP_005597397.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| D1107_RS04320 (D1107_04360) | radA | 969436..970815 (+) | 1380 | WP_005601211.1 | DNA repair protein RadA | Machinery gene |
| D1107_RS04325 (D1107_04365) | - | 970859..971092 (-) | 234 | WP_005615190.1 | YgjV family protein | - |
| D1107_RS04330 (D1107_04370) | folA | 971219..971707 (-) | 489 | WP_005597400.1 | type 3 dihydrofolate reductase | - |
| D1107_RS04335 (D1107_04375) | proB | 971794..972885 (+) | 1092 | WP_005601213.1 | glutamate 5-kinase | - |
| D1107_RS04340 (D1107_04380) | - | 972898..973674 (+) | 777 | WP_005597402.1 | TSUP family transporter | - |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 15980.38 Da Isoelectric Point: 7.6257
>NTDB_id=312024 D1107_RS04315 WP_005597397.1 968808..969254(-) (pilA) [Actinobacillus pleuropneumoniae strain 3906]
MQKLSLIRPLTNAFTLIELMIVIAIIAILATVAIPSYNSYTQKAALSELLAASASYKTDVEICIYNTGDSKNCSGGQNGV
RKMTELRQAKYLNAITVEGGTITVTGKGNLQEYGYTMTPIHNGSTISWETKCKGEDLSLFPANFCASN
MQKLSLIRPLTNAFTLIELMIVIAIIAILATVAIPSYNSYTQKAALSELLAASASYKTDVEICIYNTGDSKNCSGGQNGV
RKMTELRQAKYLNAITVEGGTITVTGKGNLQEYGYTMTPIHNGSTISWETKCKGEDLSLFPANFCASN
Nucleotide
Download Length: 447 bp
>NTDB_id=312024 D1107_RS04315 WP_005597397.1 968808..969254(-) (pilA) [Actinobacillus pleuropneumoniae strain 3906]
ATGCAAAAACTAAGTCTTATTCGACCGCTTACTAACGCGTTTACTTTAATTGAATTGATGATCGTGATTGCGATTATTGC
CATTTTAGCTACGGTTGCAATTCCGTCATATAACAGTTATACCCAAAAAGCGGCGCTTTCGGAGCTATTGGCGGCATCGG
CTTCTTATAAAACGGATGTCGAGATCTGCATATATAACACCGGAGATTCTAAAAACTGTAGCGGCGGTCAAAACGGTGTC
AGAAAAATGACGGAGCTTAGACAGGCTAAATATTTAAATGCCATTACGGTGGAAGGCGGAACTATTACAGTAACGGGGAA
AGGGAATCTACAGGAATACGGTTATACGATGACACCGATTCATAACGGTAGCACTATTTCTTGGGAAACGAAATGTAAAG
GGGAGGACTTAAGTTTATTTCCGGCAAATTTCTGCGCATCAAATTAA
ATGCAAAAACTAAGTCTTATTCGACCGCTTACTAACGCGTTTACTTTAATTGAATTGATGATCGTGATTGCGATTATTGC
CATTTTAGCTACGGTTGCAATTCCGTCATATAACAGTTATACCCAAAAAGCGGCGCTTTCGGAGCTATTGGCGGCATCGG
CTTCTTATAAAACGGATGTCGAGATCTGCATATATAACACCGGAGATTCTAAAAACTGTAGCGGCGGTCAAAACGGTGTC
AGAAAAATGACGGAGCTTAGACAGGCTAAATATTTAAATGCCATTACGGTGGAAGGCGGAACTATTACAGTAACGGGGAA
AGGGAATCTACAGGAATACGGTTATACGATGACACCGATTCATAACGGTAGCACTATTTCTTGGGAAACGAAATGTAAAG
GGGAGGACTTAAGTTTATTTCCGGCAAATTTCTGCGCATCAAATTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Glaesserella parasuis strain SC1401 |
68.919 |
100 |
0.689 |
| pilA | Haemophilus influenzae 86-028NP |
55.102 |
99.324 |
0.547 |
| pilA | Haemophilus influenzae Rd KW20 |
53.061 |
99.324 |
0.527 |