Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   D1107_RS01025 Genome accession   NZ_CP031860
Coordinates   220982..222280 (+) Length   432 a.a.
NCBI ID   WP_237592890.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae strain 3906     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 215982..227280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1107_RS01000 (D1107_01030) - 216154..218721 (-) 2568 WP_237592889.1 penicillin-binding protein 1A -
  D1107_RS01005 (D1107_01035) - 218860..219540 (+) 681 WP_005611327.1 hypothetical protein -
  D1107_RS01010 (D1107_01040) - 219522..220043 (+) 522 WP_005595970.1 hypothetical protein -
  D1107_RS01015 (D1107_01045) - 220142..220573 (+) 432 WP_005595972.1 hypothetical protein -
  D1107_RS01020 (D1107_01050) - 220566..220970 (+) 405 WP_005595974.1 hypothetical protein -
  D1107_RS01025 (D1107_01055) comE 220982..222280 (+) 1299 WP_237592890.1 type IV pilus secretin PilQ Machinery gene
  D1107_RS01030 (D1107_01060) nusB 222406..222819 (+) 414 WP_005595979.1 transcription antitermination factor NusB -
  D1107_RS01035 (D1107_01065) thiL 222884..223849 (+) 966 WP_043995046.1 thiamine-phosphate kinase -
  D1107_RS01040 (D1107_01070) - 223862..224335 (+) 474 WP_215577939.1 phosphatidylglycerophosphatase A -
  D1107_RS01045 (D1107_01075) - 224344..224970 (+) 627 WP_237592891.1 LysE family transporter -
  D1107_RS01050 (D1107_01080) - 225029..226066 (-) 1038 WP_237592892.1 TrmH family RNA methyltransferase -
  D1107_RS01055 (D1107_01085) suhB 226232..227044 (+) 813 WP_005595989.1 inositol-1-monophosphatase -

Sequence

Protein


Download         Length: 432 a.a.        Molecular weight: 47759.92 Da        Isoelectric Point: 9.4227

>NTDB_id=312017 D1107_RS01025 WP_237592890.1 220982..222280(+) (comE) [Actinobacillus pleuropneumoniae strain 3906]
MRKMIWLLLFILTPVMANTFSLSLKNAPTAEILSYLAEEYGKNIVLSDNIETNTTLRIENSDFDSVLKSITRANKLTSAY
EKQIYFIGHKKDEKAATAIGVNSDLLKPKLITKTIKLDYAKAAEVIESLTKGSGHFLSENGYLHFDDRSNSLIIKDSPES
MKNIVQLIRNLDKPTEQIAIEARIVTISSENLQELGVRWGIFAPTNGHHKIAGSLEANGLPNTNRLNVNFPVNNAASIAL
QVAKINGRVLDLELTALEQENNVEIIASPRLLTTNKKPASIKQGAEIPYVLYNRKDEVKNIEFKEAVLGLQVTPHISNDK
QILLDLVVTQNSPNSTGSTLQGLVTIDKQELNTQVFAQHGETIVLGGIFQHLTAKGEDRVPILGSIPVLKKLFSHSSDKI
SKRELVIFVTPYIVKNGQPQISSHSSQKLAPK

Nucleotide


Download         Length: 1299 bp        

>NTDB_id=312017 D1107_RS01025 WP_237592890.1 220982..222280(+) (comE) [Actinobacillus pleuropneumoniae strain 3906]
ATGCGAAAAATGATTTGGTTGCTCCTGTTTATATTAACGCCGGTTATGGCAAATACTTTTTCTCTCTCGCTGAAAAATGC
GCCGACTGCGGAAATTTTAAGTTATTTAGCCGAAGAATACGGTAAAAATATCGTGTTAAGCGACAATATTGAGACAAATA
CTACATTAAGAATTGAAAATAGTGATTTTGACAGCGTATTAAAAAGTATTACTCGGGCGAATAAACTCACGAGTGCATAC
GAAAAACAGATCTATTTTATCGGGCATAAAAAAGATGAGAAAGCGGCTACGGCAATAGGCGTAAATTCTGATTTATTGAA
ACCTAAATTGATCACTAAGACAATAAAATTAGATTATGCGAAGGCGGCGGAAGTGATTGAATCTTTAACTAAAGGAAGCG
GCCATTTTTTATCGGAAAACGGCTATTTGCATTTTGATGATCGTAGTAACAGTTTGATTATTAAAGACAGTCCGGAATCG
ATGAAAAATATCGTGCAATTAATCAGAAACTTAGATAAACCGACCGAACAGATTGCAATTGAAGCCAGAATTGTCACGAT
AAGCAGTGAGAATTTACAAGAATTAGGTGTGCGTTGGGGGATATTTGCTCCTACAAACGGACACCATAAAATTGCCGGTT
CGCTTGAAGCGAACGGATTACCGAATACTAATCGTTTAAACGTAAATTTTCCGGTAAATAATGCCGCTTCTATTGCACTA
CAAGTGGCGAAAATTAATGGGCGAGTGCTTGATTTGGAACTTACCGCTTTGGAACAAGAAAATAATGTTGAGATTATCGC
CAGCCCTCGTTTATTAACCACCAATAAGAAGCCGGCAAGCATTAAGCAAGGAGCGGAAATTCCTTATGTGCTGTATAACC
GTAAAGACGAAGTGAAAAATATCGAATTTAAAGAAGCGGTTTTAGGTTTACAAGTGACGCCGCATATTTCAAACGATAAG
CAAATTTTGCTCGATTTGGTAGTCACCCAAAACTCACCTAATTCGACCGGTTCAACTCTACAAGGCTTAGTGACGATTGA
TAAGCAGGAACTGAATACGCAAGTATTTGCTCAGCATGGCGAAACGATTGTGCTAGGCGGTATTTTTCAGCATTTAACCG
CAAAAGGTGAGGACAGAGTGCCGATTTTAGGTTCGATTCCGGTACTTAAAAAGTTATTTAGCCATTCTAGTGATAAAATT
AGTAAGCGTGAACTAGTGATTTTTGTGACGCCTTACATTGTTAAAAACGGACAACCGCAAATTTCCTCACATTCTTCACA
GAAATTAGCGCCAAAATAG

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(112-177)

Bacterial type II and III secretion system protein (Secretin)

(256-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Glaesserella parasuis strain SC1401

66.506

96.065

0.639
  comE Haemophilus influenzae Rd KW20

53.037

99.074

0.525
  comE Haemophilus influenzae 86-028NP

52.804

99.074

0.523
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

42.41

96.065

0.407
  pilQ Vibrio cholerae strain A1552

42.41

96.065

0.407
  pilQ Vibrio campbellii strain DS40M4

40.326

99.306

0.4

Multiple sequence alignment