Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   D1110_RS01030 Genome accession   NZ_CP031856
Coordinates   223196..224494 (+) Length   432 a.a.
NCBI ID   WP_237586077.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae strain 16287-1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 218196..229494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1110_RS01005 (D1110_01005) - 218368..220935 (-) 2568 WP_237586075.1 penicillin-binding protein 1A -
  D1110_RS01010 (D1110_01010) - 221074..221754 (+) 681 WP_237586076.1 pilus assembly protein PilM -
  D1110_RS01015 (D1110_01015) - 221736..222257 (+) 522 WP_005595970.1 hypothetical protein -
  D1110_RS01020 (D1110_01020) - 222356..222787 (+) 432 WP_005595972.1 hypothetical protein -
  D1110_RS01025 (D1110_01025) - 222780..223184 (+) 405 WP_005595974.1 hypothetical protein -
  D1110_RS01030 (D1110_01030) comE 223196..224494 (+) 1299 WP_237586077.1 type IV pilus secretin PilQ Machinery gene
  D1110_RS01035 (D1110_01035) nusB 224620..225033 (+) 414 WP_005595979.1 transcription antitermination factor NusB -
  D1110_RS01040 (D1110_01040) thiL 225098..226063 (+) 966 WP_043995046.1 thiamine-phosphate kinase -
  D1110_RS01045 (D1110_01045) - 226076..226549 (+) 474 WP_237586078.1 phosphatidylglycerophosphatase A -
  D1110_RS01050 (D1110_01050) - 226558..227184 (+) 627 WP_005595985.1 LysE family transporter -
  D1110_RS01055 (D1110_01055) - 227246..228283 (-) 1038 WP_237586079.1 TrmH family RNA methyltransferase -
  D1110_RS01060 (D1110_01060) suhB 228449..229261 (+) 813 WP_005595989.1 inositol-1-monophosphatase -

Sequence

Protein


Download         Length: 432 a.a.        Molecular weight: 47717.88 Da        Isoelectric Point: 9.5636

>NTDB_id=311937 D1110_RS01030 WP_237586077.1 223196..224494(+) (comE) [Actinobacillus pleuropneumoniae strain 16287-1]
MRKMIWLLLFILTPVMANTFSLSLKNAPTAEILSYLAEEYGKNIVLSDNIETNTTLRIENSDFGSVLKSITRANKLTSAY
EKQIYFIGHKKDEKAATAIGVNSDLLKPKLITKTIKLDYAKAAEVIESLTKGSGHFLSENGYLHFDDRSNSLIIKDSPES
MKNIVQLIRNLDKPTEQIAIEARIVTISSENLQELGVRWGIFAPTNGHHKIAGSLEANGLPNTNRLNVNFPVNNAASIAL
QVAKINGRVLDLELTALEQENNVEIIASPRLLTTNKKPASIKQGTEVPYVLYNRKDEVKNIEFKEAVLGLQVTPHISNDK
QILLDLVVTQNSPNSTGSTLQGLVTIDKQELNTQVFAQHGETIVLGGIFQHLTAKGEDRVPILGSIPVLKKLFSHSSDKI
SKRELVIFVTPYIVKNGQPQISSHSSQKLAPK

Nucleotide


Download         Length: 1299 bp        

>NTDB_id=311937 D1110_RS01030 WP_237586077.1 223196..224494(+) (comE) [Actinobacillus pleuropneumoniae strain 16287-1]
ATGCGAAAAATGATTTGGTTGCTCCTGTTTATATTAACGCCGGTTATGGCAAATACTTTTTCTCTCTCGCTGAAAAATGC
GCCGACTGCGGAAATTTTAAGTTATTTAGCCGAAGAATACGGTAAAAATATCGTGTTAAGCGACAATATTGAGACAAATA
CTACATTAAGAATTGAAAATAGTGATTTTGGCAGCGTATTAAAAAGTATTACTCGGGCGAATAAACTCACGAGTGCATAC
GAAAAACAGATCTATTTTATCGGGCATAAAAAAGATGAGAAAGCGGCTACGGCAATAGGCGTAAATTCTGATTTATTGAA
ACCTAAATTGATCACTAAGACAATAAAATTAGATTATGCGAAGGCGGCGGAAGTGATTGAATCTTTAACTAAAGGAAGCG
GCCATTTTTTATCGGAAAACGGCTATTTGCATTTTGATGATCGTAGTAACAGTTTGATTATTAAAGACAGTCCAGAATCG
ATGAAAAATATCGTGCAATTAATCAGAAACTTAGATAAACCGACCGAACAGATTGCAATTGAAGCCAGAATTGTCACGAT
AAGCAGTGAGAATTTACAAGAATTAGGTGTGCGTTGGGGGATATTTGCTCCTACAAACGGACACCATAAAATTGCCGGTT
CGCTTGAAGCGAACGGATTACCGAATACTAATCGTTTAAACGTAAATTTTCCGGTAAATAATGCCGCTTCTATTGCACTA
CAAGTGGCGAAAATTAATGGGCGAGTGCTTGATTTGGAACTTACCGCTTTGGAACAAGAAAATAATGTTGAGATTATCGC
CAGCCCTCGTTTATTAACCACCAATAAGAAGCCGGCAAGCATTAAGCAAGGAACGGAAGTTCCTTATGTGCTGTATAACC
GTAAAGACGAAGTGAAAAATATCGAATTTAAAGAAGCGGTTTTAGGTTTACAAGTGACGCCGCATATTTCAAACGATAAG
CAAATTTTGCTCGATTTGGTAGTCACCCAAAACTCACCTAATTCGACCGGTTCAACCCTACAAGGCTTAGTGACGATTGA
TAAGCAGGAACTGAATACGCAAGTATTTGCTCAGCATGGCGAAACGATTGTGCTAGGCGGTATTTTTCAGCATTTAACCG
CAAAAGGTGAGGACAGAGTGCCGATTTTAGGTTCGATTCCGGTACTTAAAAAGTTATTTAGCCATTCTAGTGATAAAATT
AGTAAGCGTGAACTAGTGATTTTTGTGACGCCTTACATTGTTAAAAACGGACAACCGCAAATTTCCTCACATTCTTCACA
GAAATTAGCGCCAAAATAG

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(112-177)

Bacterial type II and III secretion system protein (Secretin)

(256-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Glaesserella parasuis strain SC1401

66.265

96.065

0.637
  comE Haemophilus influenzae Rd KW20

53.037

99.074

0.525
  comE Haemophilus influenzae 86-028NP

52.804

99.074

0.523
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

42.41

96.065

0.407
  pilQ Vibrio cholerae strain A1552

42.41

96.065

0.407
  pilQ Vibrio campbellii strain DS40M4

40.326

99.306

0.4

Multiple sequence alignment