Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | CTHA_RS05645 | Genome accession | NC_011026 |
| Coordinates | 1288747..1289271 (-) | Length | 174 a.a. |
| NCBI ID | WP_012499630.1 | Uniprot ID | B3QY18 |
| Organism | Chloroherpeton thalassium ATCC 35110 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1283747..1294271
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CTHA_RS05630 (Ctha_1079) | ptsP | 1284966..1286732 (+) | 1767 | WP_012499627.1 | phosphoenolpyruvate--protein phosphotransferase | - |
| CTHA_RS05635 (Ctha_1080) | - | 1286777..1287262 (-) | 486 | WP_041468320.1 | DUF2279 domain-containing protein | - |
| CTHA_RS05640 (Ctha_1081) | - | 1287295..1288605 (-) | 1311 | WP_012499629.1 | hemolysin family protein | - |
| CTHA_RS05645 (Ctha_1082) | ssb | 1288747..1289271 (-) | 525 | WP_012499630.1 | single-stranded DNA-binding protein | Machinery gene |
| CTHA_RS05650 (Ctha_1083) | rpsL | 1289652..1290038 (+) | 387 | WP_012499631.1 | 30S ribosomal protein S12 | - |
| CTHA_RS05655 (Ctha_1084) | rpsG | 1290064..1290531 (+) | 468 | WP_012499632.1 | 30S ribosomal protein S7 | - |
| CTHA_RS05660 (Ctha_1085) | fusA | 1290574..1292691 (+) | 2118 | WP_012499633.1 | elongation factor G | - |
| CTHA_RS05665 (Ctha_1086) | tuf | 1292738..1293919 (+) | 1182 | WP_012499634.1 | elongation factor Tu | - |
Sequence
Protein
Download Length: 174 a.a. Molecular weight: 19274.37 Da Isoelectric Point: 5.7800
>NTDB_id=31193 CTHA_RS05645 WP_012499630.1 1288747..1289271(-) (ssb) [Chloroherpeton thalassium ATCC 35110]
MARGLNKVMLIGNLGTDPDLRVTPNGHSVANFSLATNESFKDSTGEFRERTEWHRIVVWGKLADISKQYLRKGKQVYIEG
KLQTRSWDDQKSGEKRYMTEIVCTELVMLGSAQGGGMPDPSYYPPQGDYYGSPSPQYNAPNTSSQASNYSSAPPQQSNAG
SNMPSEPEKDDLPF
MARGLNKVMLIGNLGTDPDLRVTPNGHSVANFSLATNESFKDSTGEFRERTEWHRIVVWGKLADISKQYLRKGKQVYIEG
KLQTRSWDDQKSGEKRYMTEIVCTELVMLGSAQGGGMPDPSYYPPQGDYYGSPSPQYNAPNTSSQASNYSSAPPQQSNAG
SNMPSEPEKDDLPF
Nucleotide
Download Length: 525 bp
>NTDB_id=31193 CTHA_RS05645 WP_012499630.1 1288747..1289271(-) (ssb) [Chloroherpeton thalassium ATCC 35110]
ATGGCAAGAGGTTTAAATAAAGTGATGCTTATCGGCAATCTTGGAACAGACCCGGATCTACGAGTTACACCTAACGGTCA
TTCTGTTGCAAATTTTAGTCTTGCGACTAATGAAAGTTTTAAAGATAGCACAGGAGAATTTAGGGAACGCACTGAATGGC
ATCGCATTGTTGTTTGGGGAAAATTAGCGGACATCAGCAAGCAATACTTGAGAAAAGGAAAGCAAGTTTATATCGAAGGA
AAGCTTCAAACAAGAAGTTGGGATGATCAAAAAAGTGGCGAAAAGCGCTATATGACAGAAATTGTTTGTACTGAATTAGT
CATGTTAGGCTCCGCACAAGGAGGCGGTATGCCTGACCCATCTTACTATCCGCCTCAAGGAGATTACTATGGTAGCCCAT
CACCTCAATATAATGCACCGAATACTTCATCGCAGGCATCAAATTATAGCTCAGCGCCACCGCAACAGTCAAATGCCGGC
TCCAATATGCCATCTGAGCCAGAAAAAGATGACTTACCGTTCTAA
ATGGCAAGAGGTTTAAATAAAGTGATGCTTATCGGCAATCTTGGAACAGACCCGGATCTACGAGTTACACCTAACGGTCA
TTCTGTTGCAAATTTTAGTCTTGCGACTAATGAAAGTTTTAAAGATAGCACAGGAGAATTTAGGGAACGCACTGAATGGC
ATCGCATTGTTGTTTGGGGAAAATTAGCGGACATCAGCAAGCAATACTTGAGAAAAGGAAAGCAAGTTTATATCGAAGGA
AAGCTTCAAACAAGAAGTTGGGATGATCAAAAAAGTGGCGAAAAGCGCTATATGACAGAAATTGTTTGTACTGAATTAGT
CATGTTAGGCTCCGCACAAGGAGGCGGTATGCCTGACCCATCTTACTATCCGCCTCAAGGAGATTACTATGGTAGCCCAT
CACCTCAATATAATGCACCGAATACTTCATCGCAGGCATCAAATTATAGCTCAGCGCCACCGCAACAGTCAAATGCCGGC
TCCAATATGCCATCTGAGCCAGAAAAAGATGACTTACCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
48.066 |
100 |
0.5 |
| ssb | Glaesserella parasuis strain SC1401 |
44.693 |
100 |
0.46 |
| ssb | Neisseria meningitidis MC58 |
42.529 |
100 |
0.425 |
| ssb | Neisseria gonorrhoeae MS11 |
42.529 |
100 |
0.425 |