Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   D0851_RS15790 Genome accession   NZ_CP031848
Coordinates   3342764..3343294 (+) Length   176 a.a.
NCBI ID   WP_117619482.1    Uniprot ID   A0A346S427
Organism   Marinobacter sp. Arc7-DN-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 3342764..3353166 3342764..3343294 within 0


Gene organization within MGE regions


Location: 3342764..3353166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0851_RS15790 (D0851_15790) ssb 3342764..3343294 (+) 531 WP_117619482.1 single-stranded DNA-binding protein Machinery gene
  D0851_RS15795 (D0851_15795) - 3343468..3344694 (+) 1227 WP_205422222.1 tyrosine-type recombinase/integrase -
  D0851_RS15805 (D0851_15805) tnpC 3344895..3346460 (-) 1566 WP_117619484.1 IS66 family transposase -
  D0851_RS15810 (D0851_15810) tnpB 3346536..3346871 (-) 336 WP_162893759.1 IS66 family insertion sequence element accessory protein TnpB -
  D0851_RS15815 (D0851_15815) tnpA 3346868..3347245 (-) 378 WP_117619486.1 IS66-like element accessory protein TnpA -
  D0851_RS15820 (D0851_15820) - 3347522..3348730 (+) 1209 WP_227539326.1 tyrosine-type recombinase/integrase -
  D0851_RS15825 (D0851_15825) - 3348723..3350120 (+) 1398 WP_205422224.1 hypothetical protein -
  D0851_RS15830 (D0851_15830) istB 3350117..3350857 (-) 741 WP_092034459.1 IS21-like element helper ATPase IstB -
  D0851_RS15835 (D0851_15835) istA 3350844..3352348 (-) 1505 Protein_3105 IS21 family transposase -
  D0851_RS15840 (D0851_15840) - 3352510..3353166 (+) 657 WP_205422226.1 hypothetical protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19298.27 Da        Isoelectric Point: 4.7890

>NTDB_id=311855 D0851_RS15790 WP_117619482.1 3342764..3343294(+) (ssb) [Marinobacter sp. Arc7-DN-1]
MARGVNKVILIGNLGQDPDTRYTPNGNAVVNLNLATDESYKDRQTGQLVPKTEWHRIVMFGKVAEVAGQYLRKGSKVYIE
GKLQTRKWQNKEGQDVYTTEVVVDINGQMQMLDSRGAEGGANQGAPAGRPQQSDYNAQGGQQNNPPPKQQSGDYGSQPSQ
GSMPEPVDDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=311855 D0851_RS15790 WP_117619482.1 3342764..3343294(+) (ssb) [Marinobacter sp. Arc7-DN-1]
ATGGCACGAGGCGTAAACAAGGTAATTCTTATCGGCAATCTGGGGCAGGACCCGGATACCCGCTACACCCCCAACGGCAA
TGCCGTGGTGAATCTGAATCTTGCGACAGACGAGAGCTACAAGGATCGTCAAACCGGCCAGCTGGTGCCGAAAACCGAGT
GGCACCGGATCGTGATGTTCGGCAAGGTTGCCGAAGTTGCCGGCCAGTACCTGCGTAAGGGCTCAAAGGTCTACATTGAG
GGCAAGCTGCAGACGCGTAAATGGCAGAACAAGGAAGGCCAGGACGTTTACACCACCGAGGTGGTGGTGGATATCAATGG
CCAGATGCAGATGCTCGACAGCCGTGGTGCCGAAGGTGGCGCGAACCAGGGCGCCCCCGCGGGGCGGCCGCAGCAGTCTG
ACTATAACGCCCAGGGCGGGCAGCAGAACAATCCGCCACCGAAGCAGCAGTCGGGCGACTATGGCAGCCAGCCGTCTCAG
GGTAGTATGCCGGAGCCGGTGGACGATTTCGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A346S427

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.284

100

0.585
  ssb Glaesserella parasuis strain SC1401

53.039

100

0.545
  ssb Neisseria meningitidis MC58

43.716

100

0.455
  ssb Neisseria gonorrhoeae MS11

44.633

100

0.449

Multiple sequence alignment