Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HYN24_RS02080 Genome accession   NZ_CP031842
Coordinates   424577..425038 (+) Length   153 a.a.
NCBI ID   WP_117607730.1    Uniprot ID   A0A3B7A2L3
Organism   Dechloromonas sp. HYN0024     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 419577..430038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYN24_RS02065 (HYN24_02065) uvrA 419674..422499 (-) 2826 WP_117607727.1 excinuclease ABC subunit UvrA -
  HYN24_RS15745 - 422611..423168 (-) 558 WP_162888568.1 hypothetical protein -
  HYN24_RS02075 (HYN24_02075) - 423357..424574 (+) 1218 WP_117607729.1 MFS transporter -
  HYN24_RS02080 (HYN24_02080) ssb 424577..425038 (+) 462 WP_117607730.1 single-stranded DNA-binding protein Machinery gene
  HYN24_RS02085 (HYN24_02085) - 425104..425952 (+) 849 WP_117607731.1 HDOD domain-containing protein -
  HYN24_RS02090 (HYN24_02090) - 426012..427904 (+) 1893 WP_117607732.1 potassium transporter Kup -
  HYN24_RS02095 (HYN24_02095) - 427960..428448 (-) 489 WP_117607733.1 adenylyltransferase/cytidyltransferase family protein -
  HYN24_RS02100 (HYN24_02100) - 428592..429494 (+) 903 WP_240327708.1 TRAP transporter TatT component family protein -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 16764.76 Da        Isoelectric Point: 5.9668

>NTDB_id=311762 HYN24_RS02080 WP_117607730.1 424577..425038(+) (ssb) [Dechloromonas sp. HYN0024]
MASVNKVILVGNLGKDPEVRYTASGEAMCNFSLATTDSWKDKATGEKKELTEWHRVSFFGKLAEIAGQYLKKGSQVYVEG
SLRTRKWTDKEGQERYTTEIRGDEMKMLGSRQGMGAPAGGGGGYDSEPTDYSPAPAKNKPKPSFDDLGDDIPF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=311762 HYN24_RS02080 WP_117607730.1 424577..425038(+) (ssb) [Dechloromonas sp. HYN0024]
ATGGCATCGGTAAACAAGGTGATTCTCGTCGGCAATCTGGGCAAGGATCCGGAAGTCCGCTACACCGCCAGCGGCGAGGC
AATGTGCAACTTCAGCCTGGCGACGACGGATAGCTGGAAGGACAAGGCCACTGGCGAGAAGAAAGAACTGACCGAATGGC
ATCGTGTGTCTTTCTTTGGCAAGCTGGCGGAAATCGCCGGCCAGTATCTGAAGAAGGGTTCGCAGGTCTACGTTGAAGGC
AGCCTGCGCACGCGCAAGTGGACCGACAAGGAAGGCCAGGAACGTTACACCACGGAAATCCGTGGCGACGAAATGAAGAT
GCTTGGCTCGCGCCAGGGGATGGGCGCACCGGCTGGCGGTGGCGGCGGTTATGACAGCGAGCCGACCGATTACTCGCCGG
CCCCGGCCAAGAACAAGCCGAAGCCCTCGTTTGACGATCTCGGCGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3B7A2L3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.934

100

0.614
  ssb Glaesserella parasuis strain SC1401

48.333

100

0.569
  ssb Neisseria meningitidis MC58

46.552

100

0.529
  ssb Neisseria gonorrhoeae MS11

46.552

100

0.529

Multiple sequence alignment