Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   D0819_RS16545 Genome accession   NZ_CP031784
Coordinates   3185716..3186234 (-) Length   172 a.a.
NCBI ID   WP_153257179.1    Uniprot ID   -
Organism   Bacillus subtilis strain HMNig-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3180716..3191234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0819_RS16515 (D0819_16590) yyaJ 3181220..3182575 (+) 1356 WP_049140536.1 MFS transporter -
  D0819_RS16520 (D0819_16595) maa 3182609..3183163 (-) 555 WP_032722825.1 sugar O-acetyltransferase -
  D0819_RS16525 (D0819_16600) yyaH 3183181..3183561 (-) 381 WP_153257178.1 VOC family protein -
  D0819_RS16530 (D0819_16605) ccpB 3183617..3184552 (-) 936 WP_077670817.1 transcriptional regulator CcpB -
  D0819_RS16535 (D0819_16610) xth 3184611..3185369 (-) 759 WP_015250782.1 exodeoxyribonuclease III -
  D0819_RS16540 (D0819_16615) rpsR 3185433..3185672 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  D0819_RS16545 (D0819_16620) ssbA 3185716..3186234 (-) 519 WP_153257179.1 single-stranded DNA-binding protein SsbA Machinery gene
  D0819_RS16550 (D0819_16625) rpsF 3186275..3186562 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  D0819_RS16555 (D0819_16630) ychF 3186673..3187773 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  D0819_RS16560 (D0819_16635) yyaE 3187900..3189903 (-) 2004 WP_153257180.1 molybdopterin-dependent oxidoreductase -
  D0819_RS16565 (D0819_16640) yyzM 3189954..3190160 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18772.33 Da        Isoelectric Point: 4.7621

>NTDB_id=311409 D0819_RS16545 WP_153257179.1 3185716..3186234(-) (ssbA) [Bacillus subtilis strain HMNig-2]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSSGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=311409 D0819_RS16545 WP_153257179.1 3185716..3186234(-) (ssbA) [Bacillus subtilis strain HMNig-2]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAAGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGCAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

99.419

100

0.994
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment