Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   D0819_RS13695 Genome accession   NZ_CP031784
Coordinates   2624457..2625614 (-) Length   385 a.a.
NCBI ID   WP_003227983.1    Uniprot ID   A0A199WDV9
Organism   Bacillus subtilis strain HMNig-2     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2619457..2630614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0819_RS13665 (D0819_13720) yvyF 2619710..2620129 (-) 420 WP_153257059.1 TIGR03826 family flagellar region protein -
  D0819_RS13670 (D0819_13725) comFC 2620203..2620925 (-) 723 WP_064671523.1 comF operon protein ComFC Machinery gene
  D0819_RS13675 (D0819_13730) comFB 2620889..2621185 (-) 297 WP_003227989.1 late competence protein ComFB -
  D0819_RS13680 (D0819_13735) comFA 2621245..2622636 (-) 1392 WP_070547860.1 ATP-dependent helicase ComFA Machinery gene
  D0819_RS13685 (D0819_13740) fakBA 2622742..2623587 (-) 846 WP_153257060.1 DegV family protein -
  D0819_RS13690 (D0819_13745) degU 2623685..2624374 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  D0819_RS13695 (D0819_13750) degS 2624457..2625614 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  D0819_RS13700 (D0819_13755) yvyE 2625831..2626484 (+) 654 WP_003227979.1 YigZ family protein -
  D0819_RS13705 (D0819_13760) tagV 2626484..2627659 (+) 1176 WP_103803401.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  D0819_RS13710 (D0819_13765) tagO 2627732..2628808 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -
  D0819_RS13715 (D0819_13770) tuaH 2628953..2630146 (-) 1194 WP_153257382.1 glycosyltransferase family 1 protein -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 44957.76 Da        Isoelectric Point: 6.2957

>NTDB_id=311401 D0819_RS13695 WP_003227983.1 2624457..2625614(-) (degS) [Bacillus subtilis strain HMNig-2]
MNKTKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVQTRHARNRLSEVSR
NFHRFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLREVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGAEDGFQEIKNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGETEDQRLAPQFEVALFRLAQEAVSNALKHSESEEITVKVEI
TKDFVILMIKDNGKGFDLKEAKEKKNKSFGLLGMKERVDLLEGTMTIDSKIGLGTFIMIKVPLSL

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=311401 D0819_RS13695 WP_003227983.1 2624457..2625614(-) (degS) [Bacillus subtilis strain HMNig-2]
ATGAATAAAACAAAGATGGATTCCAAAGTGCTGGATTCTATTTTGATGAAGATGCTGAAAACCGTTGACGGGAGCAAGGA
CGAGGTTTTTCAAATCGGGGAGCAGTCACGCCAGCAGTATGAACAGCTGGTCGAAGAACTGAAACAAATTAAACAGCAGG
TGTATGAAGTGATCGAGCTTGGCGATAAACTTGAAGTGCAAACCCGCCATGCGAGAAACCGTTTATCCGAGGTCAGCCGT
AATTTTCATAGATTCAGTGAAGAGGAAATCCGCAATGCTTATGAAAAAGCCCATAAGCTGCAGGTAGAATTGACGATGAT
CCAGCAGCGTGAGAAGCAATTGCGCGAACGGCGGGACGATTTGGAGCGCAGATTGCTAGGGCTTCAGGAAATCATTGAGC
GGTCAGAATCATTAGTAAGCCAAATTACAGTTGTGCTCAACTACTTGAATCAGGATTTGCGCGAAGTTGGACTGCTTCTT
GCTGATGCTCAGGCAAAACAGGATTTCGGCTTAAGAATTATTGAGGCGCAGGAAGAAGAGCGAAAAAGAGTCTCAAGAGA
AATCCATGACGGACCCGCTCAAATGCTGGCGAATGTTATGATGAGGTCGGAATTAATCGAGCGGATTTTCCGTGACCGGG
GCGCAGAGGACGGATTCCAAGAAATTAAAAATCTACGCCAAAATGTTCGGAATGCCCTTTACGAAGTGAGAAGGATTATA
TATGATTTAAGACCGATGGCCCTTGATGACCTAGGCCTGATTCCAACTTTAAGAAAATATCTATATACAACCGAGGAATA
TAACGGGAAGGTCAAAATACATTTTCAGTGCATTGGAGAAACAGAGGATCAGAGGCTAGCGCCTCAGTTTGAGGTTGCGC
TCTTCAGGCTCGCACAGGAAGCTGTGTCTAATGCGCTAAAGCATTCTGAATCTGAAGAAATTACAGTCAAAGTTGAGATC
ACAAAGGATTTTGTGATTTTAATGATAAAAGATAACGGTAAAGGGTTCGACCTGAAGGAAGCGAAAGAGAAGAAAAACAA
ATCATTCGGCTTGCTGGGCATGAAAGAAAGAGTAGATTTATTGGAAGGAACGATGACAATAGATTCGAAAATAGGTCTTG
GGACATTTATTATGATTAAGGTTCCGTTATCTCTTTGA

Domains

Predicted by InterproScan.

Histidine kinase (HisKA_3)

(180-248)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WDV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment