Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   D0819_RS13690 Genome accession   NZ_CP031784
Coordinates   2623685..2624374 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain HMNig-2     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2618685..2629374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0819_RS13655 (D0819_13710) flgN 2618865..2619347 (-) 483 WP_014478127.1 flagellar protein FlgN -
  D0819_RS13660 (D0819_13715) flgM 2619363..2619629 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  D0819_RS13665 (D0819_13720) yvyF 2619710..2620129 (-) 420 WP_153257059.1 TIGR03826 family flagellar region protein -
  D0819_RS13670 (D0819_13725) comFC 2620203..2620925 (-) 723 WP_064671523.1 comF operon protein ComFC Machinery gene
  D0819_RS13675 (D0819_13730) comFB 2620889..2621185 (-) 297 WP_003227989.1 late competence protein ComFB -
  D0819_RS13680 (D0819_13735) comFA 2621245..2622636 (-) 1392 WP_070547860.1 ATP-dependent helicase ComFA Machinery gene
  D0819_RS13685 (D0819_13740) fakBA 2622742..2623587 (-) 846 WP_153257060.1 DegV family protein -
  D0819_RS13690 (D0819_13745) degU 2623685..2624374 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  D0819_RS13695 (D0819_13750) degS 2624457..2625614 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  D0819_RS13700 (D0819_13755) yvyE 2625831..2626484 (+) 654 WP_003227979.1 YigZ family protein -
  D0819_RS13705 (D0819_13760) tagV 2626484..2627659 (+) 1176 WP_103803401.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  D0819_RS13710 (D0819_13765) tagO 2627732..2628808 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=311400 D0819_RS13690 WP_003219701.1 2623685..2624374(-) (degU) [Bacillus subtilis strain HMNig-2]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=311400 D0819_RS13690 WP_003219701.1 2623685..2624374(-) (degU) [Bacillus subtilis strain HMNig-2]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment