Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   D0819_RS13680 Genome accession   NZ_CP031784
Coordinates   2621245..2622636 (-) Length   463 a.a.
NCBI ID   WP_070547860.1    Uniprot ID   -
Organism   Bacillus subtilis strain HMNig-2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2616245..2627636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0819_RS13645 (D0819_13700) flgL 2616415..2617311 (-) 897 WP_014481046.1 flagellar hook-associated protein FlgL -
  D0819_RS13650 (D0819_13705) flgK 2617323..2618846 (-) 1524 WP_153257058.1 flagellar hook-associated protein FlgK -
  D0819_RS13655 (D0819_13710) flgN 2618865..2619347 (-) 483 WP_014478127.1 flagellar protein FlgN -
  D0819_RS13660 (D0819_13715) flgM 2619363..2619629 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  D0819_RS13665 (D0819_13720) yvyF 2619710..2620129 (-) 420 WP_153257059.1 TIGR03826 family flagellar region protein -
  D0819_RS13670 (D0819_13725) comFC 2620203..2620925 (-) 723 WP_064671523.1 comF operon protein ComFC Machinery gene
  D0819_RS13675 (D0819_13730) comFB 2620889..2621185 (-) 297 WP_003227989.1 late competence protein ComFB -
  D0819_RS13680 (D0819_13735) comFA 2621245..2622636 (-) 1392 WP_070547860.1 ATP-dependent helicase ComFA Machinery gene
  D0819_RS13685 (D0819_13740) fakBA 2622742..2623587 (-) 846 WP_153257060.1 DegV family protein -
  D0819_RS13690 (D0819_13745) degU 2623685..2624374 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  D0819_RS13695 (D0819_13750) degS 2624457..2625614 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  D0819_RS13700 (D0819_13755) yvyE 2625831..2626484 (+) 654 WP_003227979.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52557.52 Da        Isoelectric Point: 9.7976

>NTDB_id=311399 D0819_RS13680 WP_070547860.1 2621245..2622636(-) (comFA) [Bacillus subtilis strain HMNig-2]
MNVPVEKNSSFSRELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRGYRCNRCGQTDQRYYSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWEEENEPNWQSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGAEISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFRGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEYADGDVIFFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=311399 D0819_RS13680 WP_070547860.1 2621245..2622636(-) (comFA) [Bacillus subtilis strain HMNig-2]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCTAGAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGGGATATAGATGTAATAGGTGCGGCCAAACTGATCAGCGGTATTATTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGGAAGAGGAAAATGA
ACCAAACTGGCAGTCAATTAAACTGACATGGGACGGCAAGCTTTCAAGCGGACAGCAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGGCT
CAAGGCTGCCTTTCAGGGTGCTGAAATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCACTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAGAGGTGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCACCTATCTTTACGGAAAGTGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTTCTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(326-423)

Type III restriction enzyme, res subunit (ResIII)

(120-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

97.84

100

0.978

Multiple sequence alignment