Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   D0819_RS13670 Genome accession   NZ_CP031784
Coordinates   2620203..2620925 (-) Length   240 a.a.
NCBI ID   WP_064671523.1    Uniprot ID   -
Organism   Bacillus subtilis strain HMNig-2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2615203..2625925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0819_RS13635 (D0819_13690) fliW 2615341..2615772 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  D0819_RS13640 (D0819_13695) yviE 2615793..2616368 (-) 576 WP_014481045.1 DUF6470 family protein -
  D0819_RS13645 (D0819_13700) flgL 2616415..2617311 (-) 897 WP_014481046.1 flagellar hook-associated protein FlgL -
  D0819_RS13650 (D0819_13705) flgK 2617323..2618846 (-) 1524 WP_153257058.1 flagellar hook-associated protein FlgK -
  D0819_RS13655 (D0819_13710) flgN 2618865..2619347 (-) 483 WP_014478127.1 flagellar protein FlgN -
  D0819_RS13660 (D0819_13715) flgM 2619363..2619629 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  D0819_RS13665 (D0819_13720) yvyF 2619710..2620129 (-) 420 WP_153257059.1 TIGR03826 family flagellar region protein -
  D0819_RS13670 (D0819_13725) comFC 2620203..2620925 (-) 723 WP_064671523.1 comF operon protein ComFC Machinery gene
  D0819_RS13675 (D0819_13730) comFB 2620889..2621185 (-) 297 WP_003227989.1 late competence protein ComFB -
  D0819_RS13680 (D0819_13735) comFA 2621245..2622636 (-) 1392 WP_070547860.1 ATP-dependent helicase ComFA Machinery gene
  D0819_RS13685 (D0819_13740) fakBA 2622742..2623587 (-) 846 WP_153257060.1 DegV family protein -
  D0819_RS13690 (D0819_13745) degU 2623685..2624374 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  D0819_RS13695 (D0819_13750) degS 2624457..2625614 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27522.73 Da        Isoelectric Point: 9.3154

>NTDB_id=311398 D0819_RS13670 WP_064671523.1 2620203..2620925(-) (comFC) [Bacillus subtilis strain HMNig-2]
MSNEAGGGIHKLNCLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=311398 D0819_RS13670 WP_064671523.1 2620203..2620925(-) (comFC) [Bacillus subtilis strain HMNig-2]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGAACTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(13-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

98.75

100

0.988

Multiple sequence alignment