Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   D0808_RS14780 Genome accession   NZ_CP031783
Coordinates   2902021..2902404 (-) Length   127 a.a.
NCBI ID   WP_130572559.1    Uniprot ID   -
Organism   Bacillus subtilis strain MENO2 voucher National Research Centre     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2897021..2907404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0808_RS14740 (D0808_14855) sinI 2897953..2898126 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  D0808_RS14745 (D0808_14860) sinR 2898160..2898495 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  D0808_RS14750 (D0808_14865) tasA 2898588..2899373 (-) 786 WP_153256196.1 biofilm matrix protein TasA -
  D0808_RS14755 (D0808_14870) sipW 2899437..2900009 (-) 573 WP_003246088.1 signal peptidase I SipW -
  D0808_RS14760 (D0808_14875) tapA 2899993..2900754 (-) 762 WP_129092525.1 amyloid fiber anchoring/assembly protein TapA -
  D0808_RS14765 (D0808_14880) yqzG 2901027..2901353 (+) 327 WP_024573388.1 YqzG/YhdC family protein -
  D0808_RS14770 (D0808_14885) spoIITA 2901395..2901574 (-) 180 WP_014480252.1 YqzE family protein -
  D0808_RS14775 (D0808_14890) comGG 2901646..2902020 (-) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  D0808_RS14780 (D0808_14895) comGF 2902021..2902404 (-) 384 WP_130572559.1 ComG operon protein ComGF Machinery gene
  D0808_RS14785 (D0808_14900) comGE 2902430..2902777 (-) 348 WP_153256197.1 ComG operon protein 5 Machinery gene
  D0808_RS14790 (D0808_14905) comGD 2902761..2903192 (-) 432 WP_153256198.1 comG operon protein ComGD Machinery gene
  D0808_RS14795 (D0808_14910) comGC 2903182..2903478 (-) 297 WP_129092527.1 comG operon protein ComGC Machinery gene
  D0808_RS14800 (D0808_14915) comGB 2903492..2904529 (-) 1038 WP_153256199.1 comG operon protein ComGB Machinery gene
  D0808_RS14805 (D0808_14920) comGA 2904516..2905586 (-) 1071 WP_015714258.1 competence protein ComGA Machinery gene
  D0808_RS14815 (D0808_14930) corA 2905982..2906935 (-) 954 WP_004399136.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14340.48 Da        Isoelectric Point: 6.3242

>NTDB_id=311314 D0808_RS14780 WP_130572559.1 2902021..2902404(-) (comGF) [Bacillus subtilis strain MENO2 voucher National Research Centre]
MLISGSLAAIFHLFLSRQQEYDGFTQQEWMISVEQMMNECKESQAVKTAEHGSVLICTNLSGQDIRFEIYHSMIRKRVDG
KGHVPILDHITAMKADIKNGVVLLKIESEDQKVYQTAFPVYSYLGGG

Nucleotide


Download         Length: 384 bp        

>NTDB_id=311314 D0808_RS14780 WP_130572559.1 2902021..2902404(-) (comGF) [Bacillus subtilis strain MENO2 voucher National Research Centre]
TTGCTCATATCAGGATCGTTAGCTGCGATTTTCCATCTGTTTTTGTCTCGACAGCAGGAATATGACGGTTTCACACAGCA
AGAATGGATGATTTCGGTAGAACAGATGATGAATGAATGCAAGGAGTCACAGGCAGTTAAGACAGCCGAGCATGGGAGCG
TGTTAATCTGCACCAATCTTTCCGGGCAGGACATCCGTTTCGAAATTTATCATTCAATGATAAGAAAAAGAGTGGATGGC
AAAGGGCATGTTCCGATTTTAGATCATATTACTGCCATGAAAGCTGATATTAAAAATGGTGTTGTTTTGCTGAAAATTGA
GAGTGAGGACCAAAAAGTGTATCAAACTGCTTTTCCAGTCTATTCGTATTTAGGAGGGGGGTAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(16-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Bacillus subtilis subsp. subtilis str. 168

96.063

100

0.961

Multiple sequence alignment