Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   D0808_RS14745 Genome accession   NZ_CP031783
Coordinates   2898160..2898495 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain MENO2 voucher National Research Centre     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2893160..2903495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0808_RS14725 (D0808_14840) gcvT 2893752..2894840 (-) 1089 WP_086344077.1 glycine cleavage system aminomethyltransferase GcvT -
  D0808_RS14730 (D0808_14845) hepAA 2895282..2896955 (+) 1674 WP_047182869.1 SNF2-related protein -
  D0808_RS14735 (D0808_14850) yqhG 2896976..2897770 (+) 795 WP_003230200.1 YqhG family protein -
  D0808_RS14740 (D0808_14855) sinI 2897953..2898126 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  D0808_RS14745 (D0808_14860) sinR 2898160..2898495 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  D0808_RS14750 (D0808_14865) tasA 2898588..2899373 (-) 786 WP_153256196.1 biofilm matrix protein TasA -
  D0808_RS14755 (D0808_14870) sipW 2899437..2900009 (-) 573 WP_003246088.1 signal peptidase I SipW -
  D0808_RS14760 (D0808_14875) tapA 2899993..2900754 (-) 762 WP_129092525.1 amyloid fiber anchoring/assembly protein TapA -
  D0808_RS14765 (D0808_14880) yqzG 2901027..2901353 (+) 327 WP_024573388.1 YqzG/YhdC family protein -
  D0808_RS14770 (D0808_14885) spoIITA 2901395..2901574 (-) 180 WP_014480252.1 YqzE family protein -
  D0808_RS14775 (D0808_14890) comGG 2901646..2902020 (-) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  D0808_RS14780 (D0808_14895) comGF 2902021..2902404 (-) 384 WP_130572559.1 ComG operon protein ComGF Machinery gene
  D0808_RS14785 (D0808_14900) comGE 2902430..2902777 (-) 348 WP_153256197.1 ComG operon protein 5 Machinery gene
  D0808_RS14790 (D0808_14905) comGD 2902761..2903192 (-) 432 WP_153256198.1 comG operon protein ComGD Machinery gene
  D0808_RS14795 (D0808_14910) comGC 2903182..2903478 (-) 297 WP_129092527.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=311312 D0808_RS14745 WP_003226345.1 2898160..2898495(+) (sinR) [Bacillus subtilis strain MENO2 voucher National Research Centre]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=311312 D0808_RS14745 WP_003226345.1 2898160..2898495(+) (sinR) [Bacillus subtilis strain MENO2 voucher National Research Centre]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
TCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment