Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CJA_RS03555 Genome accession   NC_010995
Coordinates   853713..854303 (+) Length   196 a.a.
NCBI ID   WP_041551011.1    Uniprot ID   -
Organism   Cellvibrio japonicus Ueda107     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 848713..859303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJA_RS03545 (CJA_0726) uvrA 849122..851971 (-) 2850 WP_012486389.1 excinuclease ABC subunit UvrA -
  CJA_RS03550 (CJA_0727) - 852181..853578 (+) 1398 WP_041551009.1 MFS transporter -
  CJA_RS03555 (CJA_0728) ssb 853713..854303 (+) 591 WP_041551011.1 single-stranded DNA-binding protein Machinery gene
  CJA_RS03560 (CJA_0729) - 854494..855534 (+) 1041 WP_012486392.1 LacI family DNA-binding transcriptional regulator -
  CJA_RS03565 (CJA_0730) - 855637..857106 (-) 1470 WP_041551013.1 MFS transporter -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 20911.89 Da        Isoelectric Point: 4.9562

>NTDB_id=31116 CJA_RS03555 WP_041551011.1 853713..854303(+) (ssb) [Cellvibrio japonicus Ueda107]
MARGINKVILIGNIGQDPEVKYMPSGGAVTNISVATSETWKDKNTGQAQERTEWHRVVLFNRLGEIAGEYLRKGSKVYIE
GSLRTRKWQGQDGSDRYTTEIVASEMQMLDGRGDNAGAGMGGGAAAGAMGAGMGGYDQSPQYNSAPQGGFNQGGGYNQGG
YNPQQQPNRGFNQPAQNPAPNNPPSGFDSFDDDIPF

Nucleotide


Download         Length: 591 bp        

>NTDB_id=31116 CJA_RS03555 WP_041551011.1 853713..854303(+) (ssb) [Cellvibrio japonicus Ueda107]
ATGGCACGTGGTATCAACAAAGTGATCCTGATTGGCAATATAGGCCAGGACCCCGAGGTGAAATATATGCCTTCCGGTGG
CGCGGTTACCAACATCAGTGTGGCAACCTCCGAGACCTGGAAAGACAAAAACACCGGGCAGGCCCAGGAGCGTACCGAAT
GGCACCGCGTTGTGTTGTTCAACCGTTTAGGTGAAATCGCCGGTGAATACCTGCGCAAAGGCAGCAAGGTTTATATTGAA
GGTTCACTGCGCACCCGTAAATGGCAGGGCCAGGATGGTTCTGACCGCTATACCACGGAAATTGTGGCCAGCGAAATGCA
GATGCTGGACGGGCGGGGCGATAACGCCGGCGCGGGTATGGGTGGCGGTGCGGCTGCGGGAGCAATGGGGGCTGGCATGG
GCGGCTATGATCAGAGCCCTCAATATAACAGCGCACCGCAAGGTGGATTTAATCAAGGCGGCGGCTATAACCAGGGCGGT
TATAACCCCCAGCAGCAACCAAATCGGGGATTCAACCAGCCAGCGCAAAATCCGGCGCCGAATAATCCTCCATCCGGGTT
TGACAGTTTTGATGATGACATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.174

100

0.551
  ssb Glaesserella parasuis strain SC1401

50.5

100

0.515
  ssb Neisseria meningitidis MC58

44.792

97.959

0.439
  ssb Neisseria gonorrhoeae MS11

44.792

97.959

0.439

Multiple sequence alignment