Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   D0436_RS18280 Genome accession   NZ_CP031775
Coordinates   4186937..4187641 (-) Length   234 a.a.
NCBI ID   WP_023268731.1    Uniprot ID   A0A5B8R2A8
Organism   Shewanella decolorationis strain Ni1-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4181937..4192641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0436_RS18270 (D0436_19080) - 4183247..4186078 (-) 2832 WP_023268729.1 pitrilysin family protein -
  D0436_RS18275 (D0436_19085) - 4186282..4186821 (-) 540 WP_023268730.1 DUF1629 domain-containing protein -
  D0436_RS18280 (D0436_19090) ssb 4186937..4187641 (-) 705 WP_023268731.1 single-stranded DNA-binding protein Machinery gene
  D0436_RS18285 (D0436_19095) - 4187749..4189116 (-) 1368 WP_023268732.1 MFS transporter -
  D0436_RS18290 (D0436_19100) uvrA 4189527..4192379 (+) 2853 WP_023268733.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 25505.92 Da        Isoelectric Point: 6.2359

>NTDB_id=311148 D0436_RS18280 WP_023268731.1 4186937..4187641(-) (ssb) [Shewanella decolorationis strain Ni1-3]
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDQQGQQQERTEWHRVVLFGKLAEITGEYLRKGSQVYLE
GKLQTRKWKDQSGQDRYSTEVVIDQSGSMQMLGGRNQGQGQGAPMGGMQQNAGYQAAPAQTAPAQNQYAPAQQSYQAPAP
QPQSGYNQQPAQQSYGQQQSHAQQHAQPQQGGYAPKPAAPAYQAPAAPAQRPAPQPQQNFTPDLDDGWDDDIPF

Nucleotide


Download         Length: 705 bp        

>NTDB_id=311148 D0436_RS18280 WP_023268731.1 4186937..4187641(-) (ssb) [Shewanella decolorationis strain Ni1-3]
ATGGCCAGTCGTGGTGTTAACAAGGTAATTTTGGTTGGCAATTTGGGACAAGATCCAGAAGTACGTTACATGCCAAACGG
TAACGCAGTCGCTAACATCACAGTAGCGACCAGCGAATCGTGGAAAGACCAACAAGGTCAACAGCAAGAGCGTACTGAAT
GGCACCGTGTGGTTCTGTTTGGCAAGTTGGCTGAAATTACGGGTGAGTATCTGCGTAAAGGTTCACAGGTTTACCTCGAA
GGTAAACTGCAAACCCGTAAGTGGAAAGACCAAAGCGGTCAAGATCGTTACAGCACTGAAGTGGTTATCGACCAAAGCGG
TAGCATGCAAATGTTAGGTGGCCGCAACCAAGGTCAAGGCCAAGGTGCTCCTATGGGTGGCATGCAACAAAACGCGGGTT
ACCAAGCGGCTCCGGCTCAAACTGCGCCAGCGCAAAATCAATACGCGCCCGCACAGCAAAGTTACCAAGCACCTGCACCG
CAGCCACAATCTGGCTACAATCAGCAGCCTGCTCAGCAAAGCTATGGCCAGCAGCAATCCCATGCGCAGCAACATGCTCA
GCCACAGCAAGGTGGTTATGCGCCTAAGCCTGCTGCACCAGCGTATCAAGCGCCAGCGGCACCTGCACAACGTCCAGCGC
CACAACCACAACAAAACTTCACCCCAGATTTGGATGATGGTTGGGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B8R2A8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

60.733

81.624

0.496
  ssb Glaesserella parasuis strain SC1401

45.022

98.718

0.444
  ssb Neisseria meningitidis MC58

41.126

98.718

0.406
  ssb Neisseria gonorrhoeae MS11

40.343

99.573

0.402

Multiple sequence alignment