Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   SMLT_RS18215 Genome accession   NC_010943
Coordinates   3908395..3909453 (-) Length   352 a.a.
NCBI ID   WP_005410860.1    Uniprot ID   A0A854DVP1
Organism   Stenotrophomonas maltophilia K279a     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3903395..3914453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMLT_RS18195 (Smlt3821) - 3904333..3906300 (-) 1968 WP_005410855.1 type IV pilus secretin PilQ -
  SMLT_RS18200 (Smlt3822) - 3906322..3906825 (-) 504 WP_044571441.1 pilus assembly protein PilP -
  SMLT_RS18205 (Smlt3823) pilO 3906852..3907508 (-) 657 WP_005410857.1 type 4a pilus biogenesis protein PilO -
  SMLT_RS18210 (Smlt3824) - 3907505..3908395 (-) 891 WP_012481141.1 PilN domain-containing protein -
  SMLT_RS18215 (Smlt3825) pilM 3908395..3909453 (-) 1059 WP_005410860.1 pilus assembly protein PilM Machinery gene
  SMLT_RS18220 (Smlt3826) - 3909673..3912096 (+) 2424 WP_012481143.1 penicillin-binding protein 1A -
  SMLT_RS18225 (Smlt3827) - 3912427..3913071 (+) 645 WP_005414350.1 hypothetical protein -
  SMLT_RS18230 (Smlt3828) - 3913248..3913991 (-) 744 WP_005410863.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37739.38 Da        Isoelectric Point: 4.4047

>NTDB_id=31105 SMLT_RS18215 WP_005410860.1 3908395..3909453(-) (pilM) [Stenotrophomonas maltophilia K279a]
MGLIPKSQSPLVGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAMNRSGSKAKLAAAA
VAGSAVITKVIPMPAELDENDMEAQIELEAVNYIPYPIEEVNLDFEVIGAIPNNPEMVQVLLAASRSENVELRQSALELG
GLQAKVMDVEAFAVENAYALVASELPVSIDGVVALVDIGATMTTLNVLRGGRSLYSREQVFGGKQLTDEIMRRYGLSYEE
AGLAKRQGGLPESYEMEVLEPFKEATVQQISRLLQFFYAGSEFNRVDHIVLAGGCAVLGGLPEMVEEQLGVPTVVANPLA
QMTLGPKVNAHALAQDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=31105 SMLT_RS18215 WP_005410860.1 3908395..3909453(-) (pilM) [Stenotrophomonas maltophilia K279a]
GTGGGGCTCATCCCAAAAAGTCAGTCGCCGCTTGTAGGCGTCGACATCAGTTCGACTGCGGTAAAGCTTTTGCAGCTGTC
CCGCAGCGGCAATCGTTTCCGTGTGGAACATTACGCTGTGGAACCTCTTCCGCCGAATGCGGTGGTAGAGAAGAACATCG
TGGAAGTGGAGGCCGTGGGTGAGGCCATCCGCCGTGCCATGAACCGTTCAGGCAGCAAGGCCAAGCTGGCCGCTGCCGCC
GTCGCCGGGTCGGCGGTGATCACCAAGGTGATCCCGATGCCGGCCGAGCTCGACGAGAACGACATGGAAGCCCAGATCGA
GCTGGAAGCGGTCAACTACATTCCGTACCCGATCGAGGAAGTGAACCTGGACTTCGAGGTGATCGGGGCGATCCCGAACA
ACCCGGAGATGGTCCAGGTGCTGCTGGCCGCGTCGCGTTCGGAGAACGTGGAACTGCGCCAGTCGGCCCTGGAACTGGGT
GGCCTGCAGGCCAAGGTGATGGACGTGGAGGCCTTCGCGGTCGAGAACGCCTACGCCCTGGTCGCCAGCGAGCTGCCGGT
GTCCATCGACGGCGTGGTCGCGCTGGTCGATATCGGCGCCACCATGACCACCCTCAACGTCCTGCGCGGCGGCCGCAGCC
TGTACAGCCGCGAACAGGTGTTCGGTGGCAAGCAGCTGACCGACGAGATCATGCGCCGTTACGGCCTGAGCTACGAGGAG
GCCGGCCTGGCCAAGCGCCAGGGCGGGCTGCCGGAAAGCTACGAGATGGAAGTGCTGGAGCCGTTCAAGGAAGCCACGGT
CCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTATGCAGGCAGTGAGTTCAACCGCGTTGATCACATCGTGCTGGCCGGCG
GCTGCGCCGTGCTGGGCGGGCTGCCGGAAATGGTCGAGGAGCAGCTGGGCGTGCCGACCGTGGTCGCCAACCCGTTGGCA
CAGATGACCCTGGGCCCGAAGGTGAACGCACATGCGCTGGCCCAGGATGCCCCCGCGCTGATGATCGCCACCGGTCTGGC
GCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A854DVP1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.136

100

0.511
  comM Acinetobacter nosocomialis M2

51.136

100

0.511
  comM Acinetobacter baylyi ADP1

50

100

0.5
  pilM Legionella pneumophila strain ERS1305867

47.863

99.716

0.477

Multiple sequence alignment