Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   D0Y85_RS16490 Genome accession   NZ_CP031741
Coordinates   3593195..3594253 (-) Length   352 a.a.
NCBI ID   WP_117311294.1    Uniprot ID   -
Organism   Stenotrophomonas sp. G4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3588195..3599253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0Y85_RS16470 - 3589112..3591091 (-) 1980 WP_117311291.1 type IV pilus secretin PilQ family protein -
  D0Y85_RS16475 - 3591113..3591649 (-) 537 WP_170919634.1 pilus assembly protein PilP -
  D0Y85_RS16480 pilO 3591646..3592302 (-) 657 WP_117311292.1 type 4a pilus biogenesis protein PilO -
  D0Y85_RS16485 - 3592299..3593195 (-) 897 WP_117311293.1 PilN domain-containing protein -
  D0Y85_RS16490 pilM 3593195..3594253 (-) 1059 WP_117311294.1 pilus assembly protein PilM Machinery gene
  D0Y85_RS16495 - 3594471..3596897 (+) 2427 WP_117311295.1 penicillin-binding protein 1A -
  D0Y85_RS16500 - 3597149..3597793 (+) 645 WP_033831892.1 hypothetical protein -
  D0Y85_RS16505 - 3597855..3598592 (-) 738 WP_117311296.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37722.35 Da        Isoelectric Point: 4.4047

>NTDB_id=310973 D0Y85_RS16490 WP_117311294.1 3593195..3594253(-) (pilM) [Stenotrophomonas sp. G4]
MGLIPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAMNRSGSKAKLAAAA
VAGSAVITKVIPMPADLDENDMEAQIELEAVNYIPYPIEEVNLDFEVIGAIPNNPEMVQVLLAASRSENVELRQSALELG
GLQAKVMDVEAFAVENAFALVANELPVSAEGVVALVDIGATMTTLNVLRGGRSLYSREQVFGGKQLTDEIMRRYGLSYEE
AGLAKRQGGLPESYEMEVLEPFKEATVQQISRLLQFFYAGSEFNRVDHIVLAGGCAALAGLPEMVEEQLGVPTVVANPLA
QMTLGPKVQAHALAQDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=310973 D0Y85_RS16490 WP_117311294.1 3593195..3594253(-) (pilM) [Stenotrophomonas sp. G4]
GTGGGGCTCATCCCAAAAAGTCAGTCGCCGCTCATTGGCGTCGACATCAGTTCGACTGCGGTAAAGCTGTTGCAGCTTTC
CCGCAGCGGCAACCGTTTCCGTGTGGAACATTATGCCGTGGAACCGCTGCCGCCGAACGCGGTGGTGGAGAAGAACATCG
TTGAGGTGGAGGCCGTGGGAGAGGCCATCCGCCGGGCGATGAACCGTTCCGGCAGCAAGGCCAAGCTGGCCGCTGCGGCC
GTGGCCGGTTCGGCGGTGATCACCAAGGTGATCCCGATGCCGGCCGACCTGGACGAGAACGACATGGAAGCCCAGATCGA
GCTGGAAGCGGTCAACTACATTCCGTATCCGATCGAGGAAGTGAACCTGGACTTCGAGGTGATCGGGGCGATCCCGAACA
ACCCGGAAATGGTCCAGGTGCTGCTGGCGGCGTCGCGCTCGGAAAACGTCGAACTGCGCCAGTCCGCGCTGGAACTGGGC
GGTCTGCAGGCCAAGGTGATGGACGTGGAGGCCTTCGCGGTCGAGAACGCCTTCGCCCTGGTGGCCAACGAGCTGCCGGT
GTCGGCCGAGGGCGTGGTCGCGCTGGTCGATATCGGCGCCACCATGACCACCCTCAACGTGCTGCGCGGTGGCCGTAGCC
TGTACAGCCGCGAACAGGTGTTCGGCGGCAAGCAGCTGACCGACGAGATCATGCGCCGCTATGGCCTGAGCTACGAGGAA
GCCGGTCTGGCCAAGCGCCAGGGCGGGCTGCCGGAAAGCTACGAGATGGAAGTGCTGGAGCCGTTCAAGGAAGCCACGGT
CCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTACGCCGGCAGCGAGTTCAACCGCGTCGATCACATCGTGCTGGCTGGCG
GCTGTGCCGCCCTTGCAGGCCTGCCGGAGATGGTCGAGGAACAGCTGGGCGTACCGACCGTGGTCGCCAACCCGCTGGCA
CAGATGACCCTGGGGCCGAAGGTGCAGGCGCACGCGCTGGCCCAGGACGCCCCCGCGCTGATGATCGCGACCGGTCTGGC
GCTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.989

100

0.52
  comM Acinetobacter nosocomialis M2

51.989

100

0.52
  comM Acinetobacter baylyi ADP1

50.284

100

0.503
  pilM Legionella pneumophila strain ERS1305867

47.293

99.716

0.472

Multiple sequence alignment