Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | D0Y85_RS04830 | Genome accession | NZ_CP031741 |
| Coordinates | 1055379..1056542 (+) | Length | 387 a.a. |
| NCBI ID | WP_049467229.1 | Uniprot ID | - |
| Organism | Stenotrophomonas sp. G4 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1050379..1061542
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D0Y85_RS04800 | soxR | 1050556..1050990 (+) | 435 | WP_032951587.1 | redox-sensitive transcriptional activator SoxR | - |
| D0Y85_RS04805 | - | 1051028..1051630 (-) | 603 | WP_025874043.1 | short chain dehydrogenase | - |
| D0Y85_RS04810 | - | 1051729..1052604 (+) | 876 | WP_117309690.1 | LysR family transcriptional regulator | - |
| D0Y85_RS04815 | proC | 1052659..1053480 (-) | 822 | WP_117309691.1 | pyrroline-5-carboxylate reductase | - |
| D0Y85_RS04820 | - | 1053497..1054174 (-) | 678 | WP_093817534.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| D0Y85_RS04825 | pilT | 1054262..1055299 (+) | 1038 | WP_004147099.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| D0Y85_RS04830 | pilU | 1055379..1056542 (+) | 1164 | WP_049467229.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| D0Y85_RS04835 | - | 1056613..1057266 (+) | 654 | WP_162887614.1 | PIN domain-containing protein | - |
| D0Y85_RS04840 | - | 1057380..1057955 (+) | 576 | WP_140224771.1 | hypothetical protein | - |
| D0Y85_RS04845 | - | 1058044..1059027 (+) | 984 | WP_117309694.1 | aldo/keto reductase | - |
| D0Y85_RS04855 | - | 1059157..1060056 (-) | 900 | WP_033830519.1 | LysR family transcriptional regulator | - |
| D0Y85_RS04860 | - | 1060267..1060479 (+) | 213 | WP_117309695.1 | DUF4287 domain-containing protein | - |
| D0Y85_RS04865 | - | 1060752..1061459 (+) | 708 | WP_117309696.1 | YitT family protein | - |
Sequence
Protein
Download Length: 387 a.a. Molecular weight: 43182.62 Da Isoelectric Point: 6.6616
>NTDB_id=310963 D0Y85_RS04830 WP_049467229.1 1055379..1056542(+) (pilU) [Stenotrophomonas sp. G4]
MPHWEPAVNTTATTIDFTSFLKLMAHQRASDLFITAGMPPAIKVNGKISPITQTPLTPQQSRDLVLNVMTPAQREEFEKT
HECNFAIGLSGVGRFRVSCFYQRNQVGMVLRRIETRIPTVEELSLPPIIKTLAMTKRGIILFVGATGTGKSTSLAAMIGY
RNQNSTGHIITIEDPIEFVHKHEGCIITQREVGIDTDSWEAALKNTLRQAPDVIMIGEVRTREGMDHAIAFAETGHLVLC
TLHANNANQAMDRIVNFFPEDRRNQLLMDLSLNLKGVVAQQLIPSPDGRSRKVAMEILLGTPLVQDYIRDGEIHKLKELM
KESVQLGMKTFDQSLFELYQAGEISYEDALRYADSQNEVRLRIKLSQGGDARTLSQGLDGVEISEVR
MPHWEPAVNTTATTIDFTSFLKLMAHQRASDLFITAGMPPAIKVNGKISPITQTPLTPQQSRDLVLNVMTPAQREEFEKT
HECNFAIGLSGVGRFRVSCFYQRNQVGMVLRRIETRIPTVEELSLPPIIKTLAMTKRGIILFVGATGTGKSTSLAAMIGY
RNQNSTGHIITIEDPIEFVHKHEGCIITQREVGIDTDSWEAALKNTLRQAPDVIMIGEVRTREGMDHAIAFAETGHLVLC
TLHANNANQAMDRIVNFFPEDRRNQLLMDLSLNLKGVVAQQLIPSPDGRSRKVAMEILLGTPLVQDYIRDGEIHKLKELM
KESVQLGMKTFDQSLFELYQAGEISYEDALRYADSQNEVRLRIKLSQGGDARTLSQGLDGVEISEVR
Nucleotide
Download Length: 1164 bp
>NTDB_id=310963 D0Y85_RS04830 WP_049467229.1 1055379..1056542(+) (pilU) [Stenotrophomonas sp. G4]
ATGCCCCATTGGGAGCCCGCCGTGAACACCACCGCGACCACCATCGATTTCACCTCGTTCCTCAAGCTGATGGCGCACCA
GCGCGCCTCGGACCTGTTCATCACTGCCGGCATGCCGCCGGCGATCAAGGTCAACGGCAAGATCTCGCCGATCACCCAGA
CGCCACTGACGCCGCAGCAAAGCCGCGACCTGGTGCTGAACGTGATGACGCCGGCGCAGCGCGAGGAATTCGAAAAGACC
CACGAATGCAACTTCGCCATCGGCCTGTCCGGCGTCGGCCGCTTCCGCGTGAGCTGCTTCTACCAGCGCAACCAGGTCGG
CATGGTGCTGCGTCGCATCGAGACGCGCATCCCCACCGTGGAAGAGCTGAGCCTGCCGCCGATCATCAAGACGCTGGCGA
TGACCAAGCGCGGCATCATCCTGTTCGTCGGCGCGACCGGTACCGGTAAATCAACCTCGCTGGCAGCGATGATCGGTTAC
CGCAACCAGAATTCGACCGGGCACATCATCACCATCGAAGATCCGATCGAATTCGTGCACAAGCACGAGGGCTGCATCAT
CACCCAGCGCGAAGTCGGCATCGATACCGACAGCTGGGAAGCCGCGCTGAAGAACACCCTGCGCCAGGCGCCGGATGTGA
TCATGATCGGCGAAGTGCGTACCCGCGAGGGCATGGACCATGCCATCGCCTTCGCTGAAACCGGTCACCTGGTGCTGTGC
ACGCTGCACGCCAACAACGCCAACCAGGCGATGGACCGCATCGTCAACTTCTTCCCGGAAGATCGCCGCAACCAGCTGTT
GATGGATCTGTCGCTGAACCTCAAGGGCGTGGTCGCGCAGCAGTTGATTCCTTCGCCGGATGGCCGTTCGCGCAAGGTGG
CGATGGAGATCCTGCTGGGCACGCCGCTGGTGCAGGACTACATCCGCGACGGCGAGATCCACAAGCTGAAGGAGCTGATG
AAGGAATCGGTCCAGCTGGGCATGAAGACCTTCGACCAGAGCCTGTTCGAGCTGTACCAGGCCGGTGAGATCAGCTACGA
AGACGCACTGCGCTACGCCGATTCGCAGAACGAAGTGCGCCTGCGCATCAAGCTCAGCCAGGGCGGCGATGCCCGCACCC
TGTCGCAGGGGTTGGATGGCGTGGAGATTTCAGAGGTCCGGTGA
ATGCCCCATTGGGAGCCCGCCGTGAACACCACCGCGACCACCATCGATTTCACCTCGTTCCTCAAGCTGATGGCGCACCA
GCGCGCCTCGGACCTGTTCATCACTGCCGGCATGCCGCCGGCGATCAAGGTCAACGGCAAGATCTCGCCGATCACCCAGA
CGCCACTGACGCCGCAGCAAAGCCGCGACCTGGTGCTGAACGTGATGACGCCGGCGCAGCGCGAGGAATTCGAAAAGACC
CACGAATGCAACTTCGCCATCGGCCTGTCCGGCGTCGGCCGCTTCCGCGTGAGCTGCTTCTACCAGCGCAACCAGGTCGG
CATGGTGCTGCGTCGCATCGAGACGCGCATCCCCACCGTGGAAGAGCTGAGCCTGCCGCCGATCATCAAGACGCTGGCGA
TGACCAAGCGCGGCATCATCCTGTTCGTCGGCGCGACCGGTACCGGTAAATCAACCTCGCTGGCAGCGATGATCGGTTAC
CGCAACCAGAATTCGACCGGGCACATCATCACCATCGAAGATCCGATCGAATTCGTGCACAAGCACGAGGGCTGCATCAT
CACCCAGCGCGAAGTCGGCATCGATACCGACAGCTGGGAAGCCGCGCTGAAGAACACCCTGCGCCAGGCGCCGGATGTGA
TCATGATCGGCGAAGTGCGTACCCGCGAGGGCATGGACCATGCCATCGCCTTCGCTGAAACCGGTCACCTGGTGCTGTGC
ACGCTGCACGCCAACAACGCCAACCAGGCGATGGACCGCATCGTCAACTTCTTCCCGGAAGATCGCCGCAACCAGCTGTT
GATGGATCTGTCGCTGAACCTCAAGGGCGTGGTCGCGCAGCAGTTGATTCCTTCGCCGGATGGCCGTTCGCGCAAGGTGG
CGATGGAGATCCTGCTGGGCACGCCGCTGGTGCAGGACTACATCCGCGACGGCGAGATCCACAAGCTGAAGGAGCTGATG
AAGGAATCGGTCCAGCTGGGCATGAAGACCTTCGACCAGAGCCTGTTCGAGCTGTACCAGGCCGGTGAGATCAGCTACGA
AGACGCACTGCGCTACGCCGATTCGCAGAACGAAGTGCGCCTGCGCATCAAGCTCAGCCAGGGCGGCGATGCCCGCACCC
TGTCGCAGGGGTTGGATGGCGTGGAGATTTCAGAGGTCCGGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
67.575 |
94.832 |
0.641 |
| pilU | Acinetobacter baylyi ADP1 |
64.146 |
92.248 |
0.592 |
| pilU | Vibrio cholerae strain A1552 |
53.371 |
91.99 |
0.491 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
42.817 |
91.731 |
0.393 |