Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   DDV21_RS02895 Genome accession   NZ_CP031733
Coordinates   559783..560472 (+) Length   229 a.a.
NCBI ID   WP_116878064.1    Uniprot ID   A0A372KLW4
Organism   Streptococcus chenjunshii strain Z15     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 554783..565472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDV21_RS02875 (DDV21_002875) rsmG 555487..556200 (-) 714 WP_116878068.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  DDV21_RS02880 (DDV21_002880) - 556467..557021 (+) 555 WP_116878067.1 LemA family protein -
  DDV21_RS02885 (DDV21_002885) htpX 557917..558807 (+) 891 WP_116878066.1 zinc metalloprotease HtpX -
  DDV21_RS02890 (DDV21_002890) - 559017..559550 (+) 534 WP_116878065.1 YceD family protein -
  DDV21_RS02895 (DDV21_002895) covR 559783..560472 (+) 690 WP_116878064.1 response regulator transcription factor Regulator
  DDV21_RS02900 (DDV21_002900) nrdR 560953..561447 (+) 495 WP_116878063.1 transcriptional regulator NrdR -
  DDV21_RS02905 (DDV21_002905) - 561434..562615 (+) 1182 WP_116878062.1 DnaD domain protein -
  DDV21_RS02910 (DDV21_002910) dnaI 562616..563527 (+) 912 WP_116878061.1 primosomal protein DnaI -
  DDV21_RS02915 (DDV21_002915) der 563741..565051 (+) 1311 WP_116878060.1 ribosome biogenesis GTPase Der -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26652.73 Da        Isoelectric Point: 4.8661

>NTDB_id=310825 DDV21_RS02895 WP_116878064.1 559783..560472(+) (covR) [Streptococcus chenjunshii strain Z15]
MIKKVLIIEDEKNLARFVSLELQQEGYEVQIESNGRKGLDLALEKDFDLVLLDLLLPEMDGFEITRRLQAEKNTYIMMMT
ARDSVLDIVAGLDRGADDYIVKPFAIEELLARVRAIFRRQDMESTKKTHSAQGSYRDLTMNPQNRSVLRGDDEISLTKRE
YDLLNILMINMNRVMTREELLSNVWKYEEAAETNVVDVYIRYLRGKIDVPGKESYIQTVRGMGYMIREK

Nucleotide


Download         Length: 690 bp        

>NTDB_id=310825 DDV21_RS02895 WP_116878064.1 559783..560472(+) (covR) [Streptococcus chenjunshii strain Z15]
GTGATTAAAAAGGTATTGATTATTGAAGATGAAAAAAATTTGGCGCGGTTTGTTTCTTTAGAATTGCAGCAGGAAGGCTA
TGAGGTTCAGATTGAGTCGAATGGGAGAAAGGGTCTTGATTTGGCCCTTGAAAAAGATTTTGATTTGGTTCTTTTGGATT
TGCTCTTGCCGGAAATGGATGGTTTTGAAATTACTCGCAGGCTTCAGGCTGAAAAGAACACCTATATTATGATGATGACA
GCCAGAGATTCTGTTTTGGATATTGTAGCCGGCCTAGATCGCGGTGCTGATGACTATATTGTCAAACCGTTTGCTATTGA
AGAACTCTTAGCACGGGTGCGTGCTATCTTTCGCCGACAAGATATGGAATCAACCAAAAAGACACATTCAGCACAAGGTT
CTTACCGGGACTTGACTATGAATCCTCAGAATCGTTCCGTACTTAGAGGGGATGATGAAATTTCTCTGACTAAACGTGAG
TATGATTTGCTGAATATTTTAATGATAAACATGAATCGAGTTATGACTCGCGAAGAGTTGCTGTCGAATGTATGGAAGTA
TGAAGAAGCAGCTGAAACAAATGTTGTAGATGTCTATATTCGTTATTTGCGCGGTAAAATCGATGTCCCTGGCAAAGAAT
CTTATATTCAAACGGTTCGCGGTATGGGGTATATGATTCGTGAAAAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(152-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A372KLW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

76.856

100

0.769
  covR Lactococcus lactis subsp. lactis strain DGCC12653

65.639

99.127

0.651
  vicR Streptococcus mutans UA159

40.517

100

0.41
  micA Streptococcus pneumoniae Cp1015

40.343

100

0.41

Multiple sequence alignment