Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | DDV21_RS02330 | Genome accession | NZ_CP031733 |
| Coordinates | 442729..443232 (+) | Length | 167 a.a. |
| NCBI ID | WP_116877424.1 | Uniprot ID | A0A372KPF6 |
| Organism | Streptococcus chenjunshii strain Z15 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 437729..448232
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DDV21_RS02305 (DDV21_002305) | comE/blpR | 437860..438594 (+) | 735 | WP_116877428.1 | response regulator transcription factor | Regulator |
| DDV21_RS02310 (DDV21_002310) | - | 439121..439966 (+) | 846 | WP_116877427.1 | GHKL domain-containing protein | - |
| DDV21_RS02315 (DDV21_002315) | - | 440489..441583 (-) | 1095 | WP_241964691.1 | alpha/beta hydrolase | - |
| DDV21_RS02320 (DDV21_002320) | - | 441662..442084 (-) | 423 | WP_116877426.1 | helix-turn-helix domain-containing protein | - |
| DDV21_RS02325 (DDV21_002325) | rpsF | 442424..442714 (+) | 291 | WP_116877425.1 | 30S ribosomal protein S6 | - |
| DDV21_RS02330 (DDV21_002330) | ssb | 442729..443232 (+) | 504 | WP_116877424.1 | single-stranded DNA-binding protein | Machinery gene |
| DDV21_RS02335 (DDV21_002335) | rpsR | 443534..443773 (+) | 240 | WP_000068664.1 | 30S ribosomal protein S18 | - |
| DDV21_RS02345 (DDV21_002345) | - | 444165..444848 (-) | 684 | WP_116877422.1 | DUF1129 family protein | - |
| DDV21_RS02350 (DDV21_002350) | - | 445143..446087 (-) | 945 | WP_116877421.1 | magnesium transporter CorA family protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18426.20 Da Isoelectric Point: 4.9008
>NTDB_id=310822 DDV21_RS02330 WP_116877424.1 442729..443232(+) (ssb) [Streptococcus chenjunshii strain Z15]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQAGEREADFINIVIWRQAAENLANWAKKGTLLGITGRIQTR
NYENQQGQRVYVTEVVADNFQILESRAVREGNNAGSYQSAGGNQSFGAPSQGTAQQPSQNQTPNFGRDESPFGNSNPLDI
SDDDLPF
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQAGEREADFINIVIWRQAAENLANWAKKGTLLGITGRIQTR
NYENQQGQRVYVTEVVADNFQILESRAVREGNNAGSYQSAGGNQSFGAPSQGTAQQPSQNQTPNFGRDESPFGNSNPLDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=310822 DDV21_RS02330 WP_116877424.1 442729..443232(+) (ssb) [Streptococcus chenjunshii strain Z15]
ATGATTAATAATGTAGTACTTGTAGGCCGCATGACCCGTGATGCAGAATTGCGCTATACCCCAAGCAATCAGGCTGTAGC
AACATTTACTTTGGCTGTTAACCGCAACTTTAAAAATCAAGCTGGTGAACGTGAGGCTGATTTTATCAATATCGTGATTT
GGCGGCAGGCTGCAGAAAATTTGGCTAACTGGGCTAAAAAGGGAACTTTGCTTGGAATTACAGGGCGGATTCAGACCCGC
AATTATGAAAACCAGCAAGGTCAGCGAGTTTATGTAACGGAAGTTGTTGCTGATAATTTTCAAATTTTGGAGAGCCGTGC
TGTGCGTGAAGGCAACAATGCCGGCAGTTATCAGTCTGCGGGCGGGAACCAGTCTTTTGGTGCTCCCTCACAAGGCACTG
CTCAGCAGCCTTCGCAAAATCAAACACCTAATTTTGGCAGAGATGAGAGCCCCTTTGGCAATTCAAACCCATTGGATATC
TCAGATGATGATCTGCCGTTTTAG
ATGATTAATAATGTAGTACTTGTAGGCCGCATGACCCGTGATGCAGAATTGCGCTATACCCCAAGCAATCAGGCTGTAGC
AACATTTACTTTGGCTGTTAACCGCAACTTTAAAAATCAAGCTGGTGAACGTGAGGCTGATTTTATCAATATCGTGATTT
GGCGGCAGGCTGCAGAAAATTTGGCTAACTGGGCTAAAAAGGGAACTTTGCTTGGAATTACAGGGCGGATTCAGACCCGC
AATTATGAAAACCAGCAAGGTCAGCGAGTTTATGTAACGGAAGTTGTTGCTGATAATTTTCAAATTTTGGAGAGCCGTGC
TGTGCGTGAAGGCAACAATGCCGGCAGTTATCAGTCTGCGGGCGGGAACCAGTCTTTTGGTGCTCCCTCACAAGGCACTG
CTCAGCAGCCTTCGCAAAATCAAACACCTAATTTTGGCAGAGATGAGAGCCCCTTTGGCAATTCAAACCCATTGGATATC
TCAGATGATGATCTGCCGTTTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.659 |
100 |
0.629 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
56.818 |
100 |
0.599 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
52.991 |
70.06 |
0.371 |