Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | D0C16_RS19520 | Genome accession | NZ_CP031728 |
| Coordinates | 4611342..4611968 (+) | Length | 208 a.a. |
| NCBI ID | WP_151033887.1 | Uniprot ID | A0A5J6PBD6 |
| Organism | Cellvibrio sp. KY-GH-1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 4606342..4616968
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D0C16_RS19510 (D0C16_19805) | uvrA | 4606795..4609665 (-) | 2871 | WP_151033885.1 | excinuclease ABC subunit UvrA | - |
| D0C16_RS19515 (D0C16_19810) | - | 4609867..4611243 (+) | 1377 | WP_151033886.1 | MFS transporter | - |
| D0C16_RS19520 (D0C16_19815) | ssb | 4611342..4611968 (+) | 627 | WP_151033887.1 | single-stranded DNA-binding protein | Machinery gene |
| D0C16_RS19525 (D0C16_19820) | - | 4612108..4612995 (+) | 888 | WP_191968558.1 | ABC transporter substrate-binding protein | - |
| D0C16_RS19530 (D0C16_19825) | - | 4613255..4614478 (+) | 1224 | WP_151033889.1 | efflux RND transporter periplasmic adaptor subunit | - |
| D0C16_RS19535 (D0C16_19830) | - | 4614728..4615453 (+) | 726 | WP_151033890.1 | ABC transporter ATP-binding protein | - |
| D0C16_RS19540 (D0C16_19835) | - | 4615456..4616613 (+) | 1158 | WP_151033891.1 | ABC transporter permease | - |
Sequence
Protein
Download Length: 208 a.a. Molecular weight: 22532.70 Da Isoelectric Point: 5.2494
>NTDB_id=310801 D0C16_RS19520 WP_151033887.1 4611342..4611968(+) (ssb) [Cellvibrio sp. KY-GH-1]
MARGINKVILIGNIGQDPEVKYMPSGGAVTNVSVATSETWKDKNTGQPQERTEWHRVVFFNRLGEIAGEYLRKGSKVYIE
GSLRTRKWQAQDGSDRYTTEIVASEMQMLDGRGENAGMGAGMGAAAAMGAFDQTPQYNNGPQGMAPQNNGPQGGGYNQGY
NQSAQGGYAQQQPPASRPQQPQHNQQPAQYNAPPQASGFDSFDDDIPF
MARGINKVILIGNIGQDPEVKYMPSGGAVTNVSVATSETWKDKNTGQPQERTEWHRVVFFNRLGEIAGEYLRKGSKVYIE
GSLRTRKWQAQDGSDRYTTEIVASEMQMLDGRGENAGMGAGMGAAAAMGAFDQTPQYNNGPQGMAPQNNGPQGGGYNQGY
NQSAQGGYAQQQPPASRPQQPQHNQQPAQYNAPPQASGFDSFDDDIPF
Nucleotide
Download Length: 627 bp
>NTDB_id=310801 D0C16_RS19520 WP_151033887.1 4611342..4611968(+) (ssb) [Cellvibrio sp. KY-GH-1]
ATGGCTCGCGGTATTAACAAAGTTATTTTGATCGGCAATATCGGACAGGACCCGGAAGTGAAATATATGCCCTCCGGCGG
CGCGGTGACCAATGTCAGCGTAGCAACGTCAGAGACATGGAAGGACAAAAATACCGGTCAGCCGCAAGAGCGTACTGAAT
GGCACCGTGTGGTATTTTTTAACCGTCTTGGTGAGATCGCTGGCGAATACTTGCGCAAAGGCAGTAAGGTGTATATCGAA
GGTTCATTGCGTACACGCAAGTGGCAAGCGCAAGATGGTTCAGATCGCTACACCACAGAAATTGTCGCCAGCGAAATGCA
AATGCTCGATGGTCGTGGTGAAAATGCCGGCATGGGCGCGGGCATGGGTGCCGCCGCCGCTATGGGGGCTTTTGATCAAA
CTCCCCAGTACAACAATGGCCCACAGGGTATGGCGCCACAAAATAACGGCCCACAAGGCGGCGGTTACAATCAAGGGTAT
AACCAGTCAGCACAAGGTGGATATGCGCAGCAGCAACCACCGGCAAGTCGCCCGCAACAGCCGCAACACAATCAACAGCC
CGCACAATACAATGCGCCACCACAGGCGAGTGGTTTTGATTCTTTCGATGACGATATTCCGTTCTGA
ATGGCTCGCGGTATTAACAAAGTTATTTTGATCGGCAATATCGGACAGGACCCGGAAGTGAAATATATGCCCTCCGGCGG
CGCGGTGACCAATGTCAGCGTAGCAACGTCAGAGACATGGAAGGACAAAAATACCGGTCAGCCGCAAGAGCGTACTGAAT
GGCACCGTGTGGTATTTTTTAACCGTCTTGGTGAGATCGCTGGCGAATACTTGCGCAAAGGCAGTAAGGTGTATATCGAA
GGTTCATTGCGTACACGCAAGTGGCAAGCGCAAGATGGTTCAGATCGCTACACCACAGAAATTGTCGCCAGCGAAATGCA
AATGCTCGATGGTCGTGGTGAAAATGCCGGCATGGGCGCGGGCATGGGTGCCGCCGCCGCTATGGGGGCTTTTGATCAAA
CTCCCCAGTACAACAATGGCCCACAGGGTATGGCGCCACAAAATAACGGCCCACAAGGCGGCGGTTACAATCAAGGGTAT
AACCAGTCAGCACAAGGTGGATATGCGCAGCAGCAACCACCGGCAAGTCGCCCGCAACAGCCGCAACACAATCAACAGCC
CGCACAATACAATGCGCCACCACAGGCGAGTGGTTTTGATTCTTTCGATGACGATATTCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
51.643 |
100 |
0.529 |
| ssb | Glaesserella parasuis strain SC1401 |
47.826 |
99.519 |
0.476 |
| ssb | Neisseria meningitidis MC58 |
44.019 |
100 |
0.442 |
| ssb | Neisseria gonorrhoeae MS11 |
44.019 |
100 |
0.442 |