Detailed information NTG0310768

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: D0B88_RS09375
• Genome accession: NZ_CP031727
• Coordinates: 2210151..2211329 (+)
• Length: 392 a.a.
• NCBI ID: WP_151056731.1
• Uniprot ID: -
• Organism: Cellvibrio sp. KY-YJ-3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2205151..2216329

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D0B88_RS09355 (D0B88_09430)	-	2206426..2207607 (-)	1182	WP_151056725.1	lipid A deacylase LpxR family protein	-
D0B88_RS09360 (D0B88_09435)	-	2207832..2208416 (-)	585	WP_007644118.1	TetR/AcrR family transcriptional regulator	-
D0B88_RS09365 (D0B88_09440)	-	2208582..2209601 (-)	1020	WP_151056727.1	nucleoid-associated protein	-
D0B88_RS09370 (D0B88_09445)	-	2209704..2210054 (+)	351	WP_151056729.1	RidA family protein	-
D0B88_RS09375 (D0B88_09450)	pilU	2210151..2211329 (+)	1179	WP_151056731.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
D0B88_RS09380 (D0B88_09455)	-	2211375..2213849 (+)	2475	WP_151056733.1	bifunctional acetate--CoA ligase family protein/GNAT family N-acetyltransferase	-
D0B88_RS09385 (D0B88_09460)	-	2213884..2214834 (-)	951	WP_225318625.1	histone deacetylase family protein	-
D0B88_RS09390 (D0B88_09465)	purD	2215000..2216289 (-)	1290	WP_151056735.1	phosphoribosylamine--glycine ligase	-

Sequence

Protein

• Length: 392 a.a.
• Molecular weight: 43023.31 Da
• Isoelectric Point: 6.3210

>NTDB_id=310768 D0B88_RS09375 WP_151056731.1 2210151..2211329(+) (pilU) [Cellvibrio sp. KY-YJ-3]
MATPIDQYLNILAKKDGSDLYLSTGAPPCAKFQGVLKPLTSEPFKPGEIERIANAIMDEEQRNIFAQELEMNLAISIHGV
GRFRINIFKQRNEVAIVARNIKTDIPQFDDLGLPEVLKDVIMTKRGLVLFVGGTGSGKSTSLAALIDHRNSSSGGHIITI
EDPVEFVHKHKRSVINQREVGVDTRSYKAALKNTLRQAPDVILIGEIRDRETMEHALEFAETGHLAISTLHANNANQALE
RIVNLFPEERRPQLLMGLSQNLRAFVSQRLVPTVDGKRCAAVEVLLGTKTIQELIFKNRFTEIKEIMEKSENLGMQTFDG
AIFKLYMAGKISFDDAIANADSPNNLRLRIKLATDGAAPAAAEASVVKAASAVPSGFGELSLQKIDDEDGAE

Nucleotide

• Length: 1179 bp

>NTDB_id=310768 D0B88_RS09375 WP_151056731.1 2210151..2211329(+) (pilU) [Cellvibrio sp. KY-YJ-3]
ATGGCAACGCCTATCGATCAATACCTGAATATTCTCGCTAAAAAAGATGGCTCGGATTTATATCTCAGCACCGGTGCACC
ACCCTGTGCAAAATTTCAGGGGGTATTAAAACCGCTCACCTCCGAGCCGTTTAAACCCGGTGAAATTGAGCGCATCGCCA
ATGCCATTATGGATGAGGAACAGCGCAATATTTTTGCGCAAGAGCTGGAAATGAATCTGGCGATTTCGATTCACGGTGTC
GGTCGCTTCCGCATTAATATTTTTAAACAACGCAATGAAGTGGCGATTGTAGCGCGCAATATTAAAACTGATATTCCCCA
ATTTGATGACCTCGGCCTGCCCGAGGTATTAAAAGATGTGATTATGACCAAACGTGGTTTGGTGCTATTTGTCGGTGGCA
CCGGCTCGGGTAAATCGACATCGCTGGCAGCACTGATTGACCATCGTAATTCGTCCAGCGGCGGTCATATTATTACCATT
GAGGATCCGGTTGAGTTTGTCCATAAACACAAACGCAGTGTGATCAATCAGCGCGAAGTCGGCGTGGATACTCGCAGCTA
CAAAGCGGCACTTAAAAATACTCTGCGTCAAGCACCCGATGTGATTTTGATTGGTGAAATTCGTGATCGTGAAACCATGG
AACACGCGCTGGAATTTGCTGAAACCGGACATTTGGCTATTTCCACCTTGCACGCCAATAACGCCAACCAGGCACTGGAG
CGCATTGTGAATTTATTTCCCGAGGAACGCCGCCCGCAATTATTAATGGGCCTGTCGCAAAACTTGCGCGCTTTTGTCTC
CCAGCGTTTAGTGCCCACTGTGGATGGTAAACGCTGCGCGGCAGTTGAAGTATTGCTCGGCACCAAAACAATTCAGGAAT
TAATTTTTAAAAATCGGTTTACCGAAATTAAAGAGATTATGGAGAAATCTGAAAATCTCGGTATGCAAACATTTGATGGG
GCGATTTTTAAATTGTATATGGCCGGAAAAATCAGTTTTGATGATGCTATAGCCAATGCCGACTCACCCAACAATTTGCG
TTTGCGCATAAAGCTGGCAACCGATGGTGCTGCTCCCGCAGCTGCAGAGGCGTCGGTAGTCAAGGCAGCCAGTGCGGTGC
CCAGCGGTTTTGGTGAATTGAGTTTACAAAAAATAGATGATGAAGATGGCGCGGAATAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (82-271)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	54.648	90.561	0.495
pilU	Acinetobacter baylyi ADP1	52.125	90.051	0.469
pilU	Vibrio cholerae strain A1552	50	88.776	0.444
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	40.591	94.898	0.385