Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   D0B88_RS00780 Genome accession   NZ_CP031727
Coordinates   181937..182527 (-) Length   196 a.a.
NCBI ID   WP_007644503.1    Uniprot ID   I3I6A3
Organism   Cellvibrio sp. KY-YJ-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 176937..187527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0B88_RS00765 (D0B88_00765) - 178519..179559 (-) 1041 WP_007644508.1 LacI family DNA-binding transcriptional regulator -
  D0B88_RS00770 (D0B88_00770) - 179776..180690 (-) 915 WP_151059140.1 S1 family peptidase -
  D0B88_RS00775 (D0B88_00775) - 180874..181812 (-) 939 WP_151054360.1 ABC transporter substrate-binding protein -
  D0B88_RS00780 (D0B88_00780) ssb 181937..182527 (-) 591 WP_007644503.1 single-stranded DNA-binding protein Machinery gene
  D0B88_RS00785 (D0B88_00785) - 182628..184073 (-) 1446 WP_151054362.1 MFS transporter -
  D0B88_RS00790 (D0B88_00790) uvrA 184262..187144 (+) 2883 WP_151054364.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21131.21 Da        Isoelectric Point: 5.7762

>NTDB_id=310753 D0B88_RS00780 WP_007644503.1 181937..182527(-) (ssb) [Cellvibrio sp. KY-YJ-3]
MARGINKVILIGNIGQDPEVKYMPSGGAVTNVSVATSETWKDKNTGQPQERTEWHRVVFFNRLGEIAGEYLKKGSKVYIE
GALRTRKWQAQDGTDRYTTEIVASEMQMLDGRGDGAGMGNNMGAGGFDQTPQYNNQQHSNAPAQNAYNQAAAKPAANNQG
GGNQGGFGQPANRPAPQQNVPPQPAGFDSFDDDIPF

Nucleotide


Download         Length: 591 bp        

>NTDB_id=310753 D0B88_RS00780 WP_007644503.1 181937..182527(-) (ssb) [Cellvibrio sp. KY-YJ-3]
ATGGCTCGCGGGATTAACAAAGTAATTTTGATCGGCAATATCGGGCAAGACCCGGAAGTAAAATACATGCCTTCTGGCGG
TGCCGTGACTAACGTCAGCGTAGCTACCTCCGAAACCTGGAAAGACAAAAACACCGGTCAACCGCAAGAGCGCACCGAGT
GGCATCGAGTTGTATTTTTTAATCGCCTGGGGGAAATCGCGGGCGAGTATCTGAAAAAAGGCTCAAAGGTATATATCGAA
GGTGCACTGCGCACGCGTAAATGGCAGGCGCAAGACGGCACTGATCGCTACACCACCGAGATTGTGGCGAGCGAAATGCA
AATGCTGGACGGTCGCGGTGACGGCGCAGGTATGGGCAACAATATGGGCGCGGGCGGGTTTGATCAGACTCCTCAGTACA
ATAACCAACAGCACAGCAATGCGCCTGCACAAAATGCCTATAACCAAGCTGCAGCTAAACCGGCAGCCAATAATCAGGGC
GGTGGCAATCAAGGTGGTTTCGGCCAGCCCGCGAATCGCCCTGCACCACAACAAAACGTACCGCCGCAACCGGCGGGTTT
TGACTCATTTGATGACGATATTCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I3I6A3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.246

100

0.52
  ssb Glaesserella parasuis strain SC1401

51.282

99.49

0.51
  ssb Neisseria meningitidis MC58

44.792

97.959

0.439
  ssb Neisseria gonorrhoeae MS11

44.792

97.959

0.439

Multiple sequence alignment