Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   BEN71_RS17900 Genome accession   NZ_CP031716
Coordinates   3607211..3608356 (+) Length   381 a.a.
NCBI ID   WP_068975660.1    Uniprot ID   -
Organism   Acinetobacter wuhouensis strain WCHA60     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 3602211..3613356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN71_RS19560 (BEN71_17875) - 3602272..3602586 (-) 315 WP_068975665.1 hypothetical protein -
  BEN71_RS17880 (BEN71_17880) - 3602620..3604674 (-) 2055 WP_068975664.1 TonB-dependent copper receptor -
  BEN71_RS17885 (BEN71_17885) - 3604743..3605255 (-) 513 WP_068975663.1 DUF2946 family protein -
  BEN71_RS17890 (BEN71_17890) def 3605366..3605896 (-) 531 WP_068975662.1 peptide deformylase -
  BEN71_RS17895 (BEN71_17895) tsaP 3606020..3607171 (+) 1152 WP_068975661.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  BEN71_RS17900 (BEN71_17900) dprA 3607211..3608356 (+) 1146 WP_068975660.1 DNA-processing protein DprA Machinery gene
  BEN71_RS17905 (BEN71_17905) - 3608403..3608972 (+) 570 WP_068975659.1 L-threonylcarbamoyladenylate synthase -
  BEN71_RS17910 (BEN71_17910) - 3609415..3610302 (-) 888 WP_068975658.1 DMT family transporter -
  BEN71_RS17915 (BEN71_17915) - 3610416..3611072 (-) 657 WP_068975657.1 TetR/AcrR family transcriptional regulator -
  BEN71_RS17920 (BEN71_17920) - 3611212..3612456 (+) 1245 WP_068975656.1 MFS transporter -
  BEN71_RS17925 (BEN71_17925) - 3612513..3613259 (+) 747 WP_068975682.1 AraC family transcriptional regulator -

Sequence


Protein


Download         Length: 381 a.a.        Molecular weight: 43065.91 Da        Isoelectric Point: 6.3694

>NTDB_id=310704 BEN71_RS17900 WP_068975660.1 3607211..3608356(+) (dprA) [Acinetobacter wuhouensis strain WCHA60]
MLNQIPDDQFNTIKLWYLVQHSLSAFRKLETYFGSIQQAIQAENLARWSELKIHKSHIERANEYLSSNGEAKFQICIDKI
KQHTDFILLDTDPHYPQQLLAFDNHPPILFGKGSFQNLSQPQIAIVGSRKPSPHGKQVAYDFAYYLSEKGFFITSGLAQG
IDEAAHMGGLKNHRTIAVIGTGLDLIYPSQNKHVQEQILQNSGTVITEYLPETQPIQRNFPYRNRIVSGLSLGVLVAEAQ
LGSGSLITAQTAAEQGKIIFAIPGHIYGEHHQGCHQLIREGAILVDHPEQIVEDLALPTQWHCEQHVENTEKRTEVRLSP
EIPAHLFSLYQLLDWIGQDLDSLVEKSQLNTAELTSYLMELELLGLCIQQFGRYLRCRASH

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=310704 BEN71_RS17900 WP_068975660.1 3607211..3608356(+) (dprA) [Acinetobacter wuhouensis strain WCHA60]
ATGTTGAATCAAATACCCGATGATCAATTCAATACCATCAAACTGTGGTATTTGGTTCAACATTCACTCAGCGCATTTCG
GAAATTAGAAACTTATTTCGGATCTATTCAACAGGCAATTCAAGCTGAAAATTTAGCGAGATGGTCTGAACTAAAAATTC
ATAAAAGTCATATTGAACGAGCCAATGAGTATTTAAGCTCAAACGGCGAAGCTAAATTTCAAATTTGTATTGATAAAATA
AAACAACATACTGATTTTATTCTATTAGACACAGATCCTCATTACCCTCAACAACTCTTAGCTTTTGACAATCATCCACC
AATATTATTTGGCAAAGGTTCTTTCCAAAATTTAAGCCAACCGCAAATCGCGATTGTAGGCAGTCGCAAACCTAGCCCAC
ATGGTAAACAAGTGGCTTATGATTTTGCCTATTATCTCAGTGAAAAAGGCTTTTTTATCACTAGTGGTTTAGCACAAGGC
ATAGATGAAGCAGCCCATATGGGTGGCTTAAAAAATCATCGAACCATTGCTGTGATTGGAACAGGCTTAGATCTGATTTA
TCCAAGTCAAAATAAGCATGTACAAGAACAAATTTTGCAAAACTCAGGCACAGTCATTACTGAATATCTGCCTGAAACCC
AACCCATTCAACGAAACTTCCCTTATCGCAATCGTATCGTCAGCGGGCTGAGTTTAGGGGTACTGGTTGCAGAAGCACAA
TTGGGCAGTGGCTCACTGATCACGGCGCAAACTGCTGCAGAACAAGGTAAAATCATTTTCGCGATCCCTGGACATATTTA
TGGTGAACATCATCAAGGCTGTCATCAACTGATCCGTGAAGGCGCAATTCTGGTCGACCACCCTGAACAAATTGTTGAAG
ACCTCGCTTTACCTACACAATGGCATTGCGAACAACATGTTGAAAATACTGAAAAGCGTACAGAAGTCAGACTATCACCT
GAAATTCCAGCACATTTATTTAGTCTTTATCAGCTTCTCGATTGGATTGGACAAGATTTAGATTCACTGGTTGAAAAATC
ACAATTAAATACAGCAGAATTAACCAGTTATCTGATGGAACTCGAACTTTTAGGGCTGTGTATTCAGCAGTTTGGACGTT
ACTTACGTTGCCGAGCGAGTCATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

63.588

99.475

0.633

  dprA Acinetobacter baumannii D1279779

63.061

99.475

0.627

  dprA Acinetobacter baylyi ADP1

59.843

100

0.598


Multiple sequence alignment