Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   BEN71_RS17895 Genome accession   NZ_CP031716
Coordinates   3606020..3607171 (+) Length   383 a.a.
NCBI ID   WP_068975661.1    Uniprot ID   -
Organism   Acinetobacter wuhouensis strain WCHA60     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3601020..3612171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN71_RS19560 (BEN71_17875) - 3602272..3602586 (-) 315 WP_068975665.1 hypothetical protein -
  BEN71_RS17880 (BEN71_17880) - 3602620..3604674 (-) 2055 WP_068975664.1 TonB-dependent copper receptor -
  BEN71_RS17885 (BEN71_17885) - 3604743..3605255 (-) 513 WP_068975663.1 DUF2946 family protein -
  BEN71_RS17890 (BEN71_17890) def 3605366..3605896 (-) 531 WP_068975662.1 peptide deformylase -
  BEN71_RS17895 (BEN71_17895) tsaP 3606020..3607171 (+) 1152 WP_068975661.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  BEN71_RS17900 (BEN71_17900) dprA 3607211..3608356 (+) 1146 WP_068975660.1 DNA-processing protein DprA Machinery gene
  BEN71_RS17905 (BEN71_17905) - 3608403..3608972 (+) 570 WP_068975659.1 L-threonylcarbamoyladenylate synthase -
  BEN71_RS17910 (BEN71_17910) - 3609415..3610302 (-) 888 WP_068975658.1 DMT family transporter -
  BEN71_RS17915 (BEN71_17915) - 3610416..3611072 (-) 657 WP_068975657.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 41699.38 Da        Isoelectric Point: 9.0664

>NTDB_id=310703 BEN71_RS17895 WP_068975661.1 3606020..3607171(+) (tsaP) [Acinetobacter wuhouensis strain WCHA60]
MKKVLSGITNFHAKGFKKHLLAVTLCLSAGFTYMEATHASPNTNPPALKANAPNVYVVKRGDTLWDISGKFLSKPWRWPE
IWASNKHVKNPHWIYPGDKLLLCTLDGRPLIGVDEGDGCEGIIRRHQGGASLRPQVRVESINNAISVIPLSDIKPWLEHS
IVVNPESLQNIPYTVGAADNRVITGAGQTVYARGNGLVVGQRYGVYREGKPYTFVNAEGKKFNAGLELTEVASAVASASE
NDVTTLELTDSYNAEVRKGDYVLPRYDAELPSLFYPTTTNQVTSGGKVVRVQGSIGTAAQHSVVTIDRGSLQGAQSGQVF
SIYQQGETVRDPKTKESIKLPGQHIGTLMIFKSFDHLSYAYILDSSLPIKVGADIRPPAISDN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=310703 BEN71_RS17895 WP_068975661.1 3606020..3607171(+) (tsaP) [Acinetobacter wuhouensis strain WCHA60]
ATGAAAAAGGTTTTATCTGGCATAACGAACTTTCATGCCAAGGGGTTCAAGAAGCACTTGCTTGCTGTAACACTATGTTT
AAGTGCAGGATTCACTTACATGGAAGCAACACATGCAAGCCCGAATACTAACCCACCTGCGCTCAAAGCCAATGCGCCAA
ATGTCTATGTGGTGAAGCGTGGCGACACATTGTGGGATATTTCAGGAAAATTTTTGAGTAAACCGTGGCGTTGGCCTGAA
ATTTGGGCAAGCAATAAGCATGTAAAAAATCCACATTGGATTTATCCTGGCGATAAATTATTGCTTTGTACGCTGGATGG
TCGTCCTTTGATTGGGGTCGATGAAGGTGATGGTTGTGAAGGAATTATCCGTCGTCATCAAGGTGGCGCATCTTTACGAC
CTCAAGTACGCGTTGAATCGATCAATAATGCGATTTCAGTCATTCCATTGTCAGATATTAAACCTTGGTTAGAACACAGT
ATTGTGGTCAATCCAGAATCTTTACAAAACATTCCTTATACCGTGGGTGCTGCAGATAATCGTGTCATTACAGGTGCAGG
TCAAACTGTTTATGCACGTGGTAATGGTTTAGTTGTCGGACAACGCTATGGTGTTTACCGTGAAGGTAAACCTTATACAT
TTGTAAATGCGGAAGGTAAGAAATTCAACGCAGGGCTTGAATTAACTGAAGTTGCTTCTGCAGTTGCTTCTGCGTCTGAA
AATGATGTCACCACACTCGAACTGACAGATAGCTACAATGCTGAAGTCCGTAAAGGTGATTATGTTCTACCACGTTATGA
TGCTGAATTACCGAGCCTATTTTACCCAACAACAACCAATCAAGTGACTTCTGGTGGCAAAGTCGTTCGTGTTCAAGGTT
CGATTGGCACAGCAGCACAACACAGTGTCGTCACCATTGACCGTGGTAGCTTACAAGGGGCTCAGTCAGGTCAGGTATTT
AGTATTTACCAACAAGGTGAAACTGTGCGCGATCCAAAAACCAAAGAATCAATCAAATTACCTGGTCAACATATTGGTAC
ATTAATGATTTTCAAAAGTTTTGACCACCTCAGCTATGCCTATATCTTAGACAGCAGTTTGCCGATTAAAGTTGGTGCGG
ACATCCGACCGCCTGCAATTTCTGACAACTGA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(56-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

66.146

100

0.663

Multiple sequence alignment