Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   D0B54_RS04170 Genome accession   NZ_CP031704
Coordinates   862378..862887 (+) Length   169 a.a.
NCBI ID   WP_117289476.1    Uniprot ID   -
Organism   Solimonas sp. K1W22B-7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 857378..867887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0B54_RS04155 (D0B54_04155) - 857576..858028 (-) 453 WP_117289470.1 Crp/Fnr family transcriptional regulator -
  D0B54_RS04160 (D0B54_04160) uvrA 858220..861045 (-) 2826 WP_117289472.1 excinuclease ABC subunit UvrA -
  D0B54_RS04165 (D0B54_04165) - 861177..862364 (+) 1188 WP_162932192.1 MFS transporter -
  D0B54_RS04170 (D0B54_04170) ssb 862378..862887 (+) 510 WP_117289476.1 single-stranded DNA-binding protein Machinery gene
  D0B54_RS04175 (D0B54_04175) - 863079..864083 (+) 1005 WP_117289342.1 IS30 family transposase -
  D0B54_RS04180 (D0B54_04180) - 864139..865191 (-) 1053 WP_162932193.1 AraC family transcriptional regulator -
  D0B54_RS04185 (D0B54_04185) - 865464..866327 (+) 864 WP_205527265.1 SGNH/GDSL hydrolase family protein -
  D0B54_RS04190 (D0B54_04190) - 866397..867269 (-) 873 WP_162932194.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18112.03 Da        Isoelectric Point: 5.9852

>NTDB_id=310621 D0B54_RS04170 WP_117289476.1 862378..862887(+) (ssb) [Solimonas sp. K1W22B-7]
MARGVNKVILIGNLGKDPETRFFPSGDGITNATLATTESWKDKQTGEMKDATEWHNLVFPGKLAEIAGKYLKKGSKIYVE
GSIRTRKWQDKEGKDRYTTEIRVNDMQMLDGKPGGGTGAMGEERGSYEQRGSSGGGGYDQRSSGGGRSAPAPASAPADSG
GFEDDDIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=310621 D0B54_RS04170 WP_117289476.1 862378..862887(+) (ssb) [Solimonas sp. K1W22B-7]
ATGGCACGCGGCGTCAATAAAGTCATCCTCATCGGCAACCTCGGCAAAGATCCCGAAACGCGTTTCTTCCCCTCGGGCGA
CGGCATCACCAATGCCACCCTCGCCACCACCGAGAGCTGGAAGGACAAGCAGACCGGCGAAATGAAGGACGCCACCGAGT
GGCACAACCTGGTGTTCCCCGGCAAGCTCGCCGAGATCGCCGGCAAGTACCTCAAGAAGGGCTCCAAGATCTACGTCGAA
GGCTCCATCCGCACGCGCAAGTGGCAGGACAAGGAAGGCAAGGATCGCTACACCACCGAGATCCGCGTGAACGACATGCA
GATGCTCGACGGCAAGCCCGGCGGCGGCACCGGCGCCATGGGTGAGGAGCGCGGCAGCTACGAGCAGCGCGGCAGCAGCG
GCGGTGGCGGCTACGACCAGCGCTCCTCCGGCGGCGGCCGTTCCGCCCCGGCGCCGGCCAGTGCGCCGGCCGACAGCGGC
GGGTTCGAGGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.066

100

0.515
  ssb Vibrio cholerae strain A1552

48.045

100

0.509
  ssb Neisseria meningitidis MC58

41.477

100

0.432
  ssb Neisseria gonorrhoeae MS11

40.909

100

0.426

Multiple sequence alignment