Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   D0T92_RS02740 Genome accession   NZ_CP031700
Coordinates   612035..612898 (+) Length   287 a.a.
NCBI ID   WP_151050001.1    Uniprot ID   A0A5J6PST9
Organism   Neisseria zalophi strain ATCC BAA-2455     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 607035..617898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0T92_RS02730 (D0T92_02765) pilF 609062..610741 (+) 1680 WP_151049999.1 type IV-A pilus assembly ATPase PilB Machinery gene
  D0T92_RS02735 (D0T92_02770) pilG 610784..612031 (+) 1248 WP_318527727.1 type II secretion system F family protein Machinery gene
  D0T92_RS02740 (D0T92_02775) pilD 612035..612898 (+) 864 WP_151050001.1 A24 family peptidase Machinery gene
  D0T92_RS02745 (D0T92_02780) coaE 612900..613523 (+) 624 WP_151050003.1 dephospho-CoA kinase -
  D0T92_RS02750 (D0T92_02785) zapD 613520..614287 (+) 768 WP_151050005.1 cell division protein ZapD -
  D0T92_RS02755 (D0T92_02790) - 614291..614476 (+) 186 WP_151050007.1 DNA gyrase inhibitor YacG -
  D0T92_RS02760 (D0T92_02795) - 614837..615802 (+) 966 WP_191963658.1 MBL fold metallo-hydrolase -
  D0T92_RS02765 (D0T92_02800) bamC 615951..617084 (-) 1134 WP_151050009.1 outer membrane protein assembly factor BamC -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 31857.32 Da        Isoelectric Point: 8.8469

>NTDB_id=310546 D0T92_RS02740 WP_151050001.1 612035..612898(+) (pilD) [Neisseria zalophi strain ATCC BAA-2455]
MLQAFNELAPFVVPLSILFGLLVGSFLNVVIYRVPVMMERSWTVFAKEHLGMQATEEELRPFNLIKPDSRCPKCESPVKP
WQNIPVISYLLLRGRCGTCKTPISKRYPAIELLTALLFGIVAWRYGWSMVTLGGLLFTAMLVALTFIDADTQYLPDQLTL
PLIWIGLLFNLNGAFVPLYSAVLGAFWGYMALWLLCYIYKLLTGKIGMGGGDFKLLAALGAWLGVGILPVLVFMSAFIGI
IMAVIMKVAKGQQFAFGPSLAIAGWIIFIANDEVMALVRWWLNSSGF

Nucleotide


Download         Length: 864 bp        

>NTDB_id=310546 D0T92_RS02740 WP_151050001.1 612035..612898(+) (pilD) [Neisseria zalophi strain ATCC BAA-2455]
ATGTTACAAGCGTTCAACGAGCTGGCACCGTTTGTGGTGCCGCTTTCTATATTATTTGGGTTGTTGGTCGGCAGTTTTTT
AAATGTGGTGATTTACCGTGTACCAGTGATGATGGAACGTAGTTGGACAGTATTTGCCAAAGAACATCTTGGTATGCAAG
CAACAGAAGAAGAACTACGGCCGTTTAATTTAATCAAACCCGATTCCCGTTGCCCTAAATGCGAAAGCCCGGTTAAGCCT
TGGCAGAATATTCCTGTTATTAGTTATTTGCTGCTGCGCGGTCGGTGTGGAACATGCAAGACACCGATTAGCAAACGTTA
TCCGGCCATAGAGTTGTTGACGGCACTATTATTCGGTATTGTGGCTTGGCGTTATGGCTGGAGTATGGTGACATTGGGCG
GGTTACTTTTTACCGCCATGTTGGTGGCGTTGACTTTTATCGATGCCGATACGCAATATTTGCCCGACCAGTTAACTTTA
CCGTTGATATGGATCGGGTTGCTGTTTAACTTAAATGGTGCTTTTGTACCGCTTTATTCGGCGGTATTAGGCGCATTTTG
GGGTTATATGGCTTTATGGCTATTGTGTTATATCTATAAACTCCTGACCGGCAAAATCGGTATGGGTGGCGGTGATTTTA
AATTGTTGGCTGCTTTGGGTGCCTGGCTCGGTGTCGGTATTTTACCGGTATTGGTTTTTATGTCGGCATTTATCGGTATA
ATCATGGCTGTGATTATGAAGGTGGCTAAAGGCCAGCAGTTTGCATTCGGCCCCAGCTTGGCAATTGCCGGGTGGATTAT
TTTTATTGCCAATGACGAAGTGATGGCATTAGTTCGTTGGTGGTTGAACAGCTCAGGGTTTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(18-125)

Type IV leader peptidase family (Peptidase_A24)

(136-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5J6PST9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

67.845

98.606

0.669
  pilD Vibrio cholerae strain A1552

48.529

94.774

0.46
  pilD Vibrio campbellii strain DS40M4

45.139

100

0.453
  pilD Acinetobacter baumannii D1279779

48.473

91.289

0.443
  pilD Acinetobacter nosocomialis M2

48.092

91.289

0.439

Multiple sequence alignment