Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   DXY21_RS12265 Genome accession   NZ_CP031694
Coordinates   2391079..2391414 (-) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM101368     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2386079..2396414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXY21_RS12215 (DXY21_02436) comGC 2386313..2386579 (+) 267 WP_042635730.1 competence type IV pilus major pilin ComGC Machinery gene
  DXY21_RS12220 (DXY21_02437) comGD 2386569..2387006 (+) 438 WP_003153088.1 competence type IV pilus minor pilin ComGD Machinery gene
  DXY21_RS12225 (DXY21_02438) comGE 2386990..2387304 (+) 315 WP_003153089.1 competence type IV pilus minor pilin ComGE -
  DXY21_RS12230 (DXY21_02439) comGF 2387318..2387713 (+) 396 WP_003153090.1 competence type IV pilus minor pilin ComGF -
  DXY21_RS12235 (DXY21_02440) comGG 2387714..2388091 (+) 378 WP_003153092.1 competence type IV pilus minor pilin ComGG Machinery gene
  DXY21_RS12240 (DXY21_02441) - 2388148..2388327 (+) 180 WP_003153093.1 YqzE family protein -
  DXY21_RS12245 (DXY21_02442) - 2388367..2388696 (-) 330 WP_003153097.1 DUF3889 domain-containing protein -
  DXY21_RS12250 (DXY21_02443) tapA 2388955..2389626 (+) 672 WP_003153099.1 amyloid fiber anchoring/assembly protein TapA -
  DXY21_RS12255 (DXY21_02444) sipW 2389598..2390182 (+) 585 WP_003153100.1 signal peptidase I SipW -
  DXY21_RS12260 (DXY21_02445) tasA 2390246..2391031 (+) 786 WP_003153102.1 biofilm matrix protein TasA -
  DXY21_RS12265 (DXY21_02446) sinR 2391079..2391414 (-) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  DXY21_RS12270 (DXY21_02447) sinI 2391448..2391621 (-) 174 WP_003153105.1 anti-repressor SinI Regulator
  DXY21_RS12275 (DXY21_02448) - 2391798..2392592 (-) 795 WP_003153106.1 YqhG family protein -
  DXY21_RS12280 (DXY21_02449) - 2392610..2394280 (-) 1671 WP_003153107.1 DEAD/DEAH box helicase -
  DXY21_RS12285 (DXY21_02450) gcvT 2394704..2395804 (+) 1101 WP_024085597.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=310414 DXY21_RS12265 WP_003153104.1 2391079..2391414(-) (sinR) [Bacillus velezensis strain SRCM101368]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=310414 DXY21_RS12265 WP_003153104.1 2391079..2391414(-) (sinR) [Bacillus velezensis strain SRCM101368]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment