Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DXY22_RS03230 Genome accession   NZ_CP031693
Coordinates   634118..634636 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain SRCM101393     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 629118..639636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXY22_RS03200 (DXY22_00626) yyaJ 629622..630977 (+) 1356 WP_015250786.1 MFS transporter -
  DXY22_RS03205 (DXY22_00627) maa 631011..631565 (-) 555 WP_015250785.1 sugar O-acetyltransferase -
  DXY22_RS03210 (DXY22_00628) yyaH 631581..631961 (-) 381 WP_015250784.1 VOC family protein -
  DXY22_RS03215 (DXY22_00629) ccpB 632017..632952 (-) 936 WP_015250783.1 transcriptional regulator CcpB -
  DXY22_RS03220 (DXY22_00630) xth 633011..633769 (-) 759 WP_015250782.1 exodeoxyribonuclease III -
  DXY22_RS03225 (DXY22_00631) rpsR 633835..634074 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  DXY22_RS03230 (DXY22_00632) ssbA 634118..634636 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  DXY22_RS03235 (DXY22_00633) rpsF 634677..634964 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  DXY22_RS03240 (DXY22_00634) ychF 635075..636175 (-) 1101 WP_015250781.1 redox-regulated ATPase YchF -
  DXY22_RS03245 (DXY22_00635) yyaE 636302..638305 (-) 2004 WP_044052400.1 molybdopterin-dependent oxidoreductase -
  DXY22_RS03250 (DXY22_00636) yyzM 638356..638562 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=310296 DXY22_RS03230 WP_003219228.1 634118..634636(-) (ssbA) [Bacillus subtilis strain SRCM101393]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=310296 DXY22_RS03230 WP_003219228.1 634118..634636(-) (ssbA) [Bacillus subtilis strain SRCM101393]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment