Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CH556_RS03875 Genome accession   NZ_CP031692
Coordinates   755114..755635 (-) Length   173 a.a.
NCBI ID   WP_050846025.1    Uniprot ID   -
Organism   Haemophilus influenzae strain P595-8370     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 750114..760635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH556_RS03840 (CH556_03840) raiA 750335..750658 (-) 324 WP_005653397.1 ribosome-associated translation inhibitor RaiA -
  CH556_RS03845 (CH556_03845) bamC 750848..751477 (-) 630 WP_116945217.1 outer membrane protein assembly factor BamC -
  CH556_RS03850 (CH556_03850) dapA 751589..752485 (-) 897 WP_116945216.1 4-hydroxy-tetrahydrodipicolinate synthase -
  CH556_RS03855 (CH556_03855) bcp 752586..753053 (+) 468 WP_105873098.1 thioredoxin-dependent thiol peroxidase -
  CH556_RS03860 (CH556_03860) exbB 753222..753674 (+) 453 WP_116945215.1 TonB-system energizer ExbB -
  CH556_RS03865 (CH556_03865) exbD 753678..754121 (+) 444 WP_005694050.1 TonB system transport protein ExbD -
  CH556_RS03870 (CH556_03870) - 754131..754928 (+) 798 WP_021034364.1 energy transducer TonB -
  CH556_RS03875 (CH556_03875) ssb 755114..755635 (-) 522 WP_050846025.1 single-stranded DNA-binding protein Machinery gene
  CH556_RS03880 (CH556_03880) uvrA 755788..758619 (+) 2832 WP_116945214.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19159.94 Da        Isoelectric Point: 5.2649

>NTDB_id=310279 CH556_RS03875 WP_050846025.1 755114..755635(-) (ssb) [Haemophilus influenzae strain P595-8370]
MAGINKVIIVGHLGNDPEIRTMPNGDAVANISVATSESWNDRNTGERREVTEWHRIVFYRRQAEICGEYLRKGSQVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVMQMLGGRNQNAGGYGNDMGGAPQSSYQARQTNNGGSYQSSRSAPQSATSQPATPQA
EPPMDGFDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=310279 CH556_RS03875 WP_050846025.1 755114..755635(-) (ssb) [Haemophilus influenzae strain P595-8370]
ATGGCTGGAATTAATAAAGTCATTATTGTAGGTCATTTAGGTAATGATCCTGAAATTCGTACTATGCCAAACGGCGATGC
CGTTGCAAATATCAGCGTAGCAACCAGTGAAAGCTGGAACGATCGTAATACGGGCGAACGCCGTGAAGTAACAGAATGGC
ACCGCATTGTATTTTATCGTCGTCAAGCAGAGATTTGCGGCGAATATTTACGCAAAGGTTCTCAAGTGTATGTGGAAGGT
CGTTTAAAAACACGTAAATGGCAAGATCAAAATGGTCAAGATCGCTACACCACAGAAATTCAAGGCGATGTAATGCAAAT
GCTTGGTGGACGTAATCAAAACGCAGGTGGTTATGGCAATGATATGGGCGGCGCACCACAATCCTCTTACCAAGCTCGTC
AAACTAACAATGGTGGTAGTTATCAATCATCTCGTTCTGCGCCACAATCAGCCACATCACAACCAGCAACACCACAGGCT
GAGCCACCAATGGACGGATTCGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

64.674

100

0.688
  ssb Vibrio cholerae strain A1552

55.866

100

0.578
  ssb Neisseria gonorrhoeae MS11

51.124

100

0.526
  ssb Neisseria meningitidis MC58

50.562

100

0.52

Multiple sequence alignment