Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | CH556_RS02905 | Genome accession | NZ_CP031692 |
| Coordinates | 574440..574853 (+) | Length | 137 a.a. |
| NCBI ID | WP_061724236.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain P595-8370 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 569440..579853
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CH556_RS02885 (CH556_02885) | - | 569928..572522 (-) | 2595 | WP_116945279.1 | penicillin-binding protein 1A | - |
| CH556_RS02890 (CH556_02890) | comA | 572621..573418 (+) | 798 | WP_038439365.1 | pilus assembly protein PilM | Machinery gene |
| CH556_RS02895 (CH556_02895) | comB | 573419..573925 (+) | 507 | WP_005656467.1 | competence protein ComB | Machinery gene |
| CH556_RS02900 (CH556_02900) | comC | 573922..574443 (+) | 522 | WP_116945278.1 | competence protein ComC | Machinery gene |
| CH556_RS02905 (CH556_02905) | comD | 574440..574853 (+) | 414 | WP_061724236.1 | pilus assembly protein PilP | Machinery gene |
| CH556_RS02910 (CH556_02910) | comE | 574863..576200 (+) | 1338 | WP_116945277.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| CH556_RS02915 (CH556_02915) | - | 576213..576899 (+) | 687 | WP_005669238.1 | ComF family protein | - |
| CH556_RS02920 (CH556_02920) | nfuA | 576975..577571 (+) | 597 | WP_005649300.1 | Fe-S biogenesis protein NfuA | - |
| CH556_RS02925 (CH556_02925) | nudC | 577638..578432 (+) | 795 | WP_105892388.1 | NAD(+) diphosphatase | - |
| CH556_RS02930 (CH556_02930) | - | 578468..579058 (+) | 591 | WP_005656455.1 | YjaG family protein | - |
| CH556_RS02935 (CH556_02935) | - | 579198..579470 (+) | 273 | WP_005630954.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15693.83 Da Isoelectric Point: 4.4355
>NTDB_id=310268 CH556_RS02905 WP_061724236.1 574440..574853(+) (comD) [Haemophilus influenzae strain P595-8370]
MKYWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKVVGVVISKD
KAFALLQDQGLQVYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
MKYWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKVVGVVISKD
KAFALLQDQGLQVYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
Nucleotide
Download Length: 414 bp
>NTDB_id=310268 CH556_RS02905 WP_061724236.1 574440..574853(+) (comD) [Haemophilus influenzae strain P595-8370]
ATGAAGTATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGTAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCAGCTGAAATTCCTTTGAACGCTTTAAAAGTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTATTGCAAGATCAAGGTTTGCAAGTTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
ATGAAGTATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGTAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCAGCTGAAATTCCTTTGAACGCTTTAAAAGTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTATTGCAAGATCAAGGTTTGCAAGTTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae Rd KW20 |
98.54 |
100 |
0.985 |
| comD | Haemophilus influenzae 86-028NP |
97.81 |
100 |
0.978 |