Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   CH556_RS02890 Genome accession   NZ_CP031692
Coordinates   572621..573418 (+) Length   265 a.a.
NCBI ID   WP_038439365.1    Uniprot ID   -
Organism   Haemophilus influenzae strain P595-8370     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 567621..578418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH556_RS02870 (CH556_02870) recR 567864..568466 (-) 603 WP_005626527.1 recombination mediator RecR -
  CH556_RS02875 (CH556_02875) - 568528..568857 (-) 330 WP_005629464.1 YbaB/EbfC family nucleoid-associated protein -
  CH556_RS02880 (CH556_02880) - 569010..569855 (-) 846 WP_116945280.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  CH556_RS02885 (CH556_02885) - 569928..572522 (-) 2595 WP_116945279.1 penicillin-binding protein 1A -
  CH556_RS02890 (CH556_02890) comA 572621..573418 (+) 798 WP_038439365.1 pilus assembly protein PilM Machinery gene
  CH556_RS02895 (CH556_02895) comB 573419..573925 (+) 507 WP_005656467.1 competence protein ComB Machinery gene
  CH556_RS02900 (CH556_02900) comC 573922..574443 (+) 522 WP_116945278.1 competence protein ComC Machinery gene
  CH556_RS02905 (CH556_02905) comD 574440..574853 (+) 414 WP_061724236.1 pilus assembly protein PilP Machinery gene
  CH556_RS02910 (CH556_02910) comE 574863..576200 (+) 1338 WP_116945277.1 type IV pilus secretin PilQ family protein Machinery gene
  CH556_RS02915 (CH556_02915) - 576213..576899 (+) 687 WP_005669238.1 ComF family protein -
  CH556_RS02920 (CH556_02920) nfuA 576975..577571 (+) 597 WP_005649300.1 Fe-S biogenesis protein NfuA -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 31598.00 Da        Isoelectric Point: 6.0249

>NTDB_id=310265 CH556_RS02890 WP_038439365.1 572621..573418(+) (comA) [Haemophilus influenzae strain P595-8370]
MQFSLKNYRTLQIGIHRKQSYFDFVWFDDLEQPQSYQIFVNDRYFKNRFLQQLKTQYQGKTFPLQFVASIPAHLTWSKVL
MLPQVLNAQECHQQCKFVIEKELPIFLEELWFDYRSTPLKQGFRLEVTAIRKSTAQTYLQDFQPFKINVLDVASNAVLRA
FQYLLNEQVRSENTLFLFQEDDYCLAICERSQQSQILQSHENLTALYEQFTERFEGQLEQVFVYQIPSSYTPLLENWQRV
ETELPFIALGNALWQKDLHQQKVGG

Nucleotide


Download         Length: 798 bp        

>NTDB_id=310265 CH556_RS02890 WP_038439365.1 572621..573418(+) (comA) [Haemophilus influenzae strain P595-8370]
ATGCAATTCTCCCTGAAAAATTACCGCACTTTACAAATCGGCATTCATCGTAAGCAGAGTTATTTTGATTTTGTGTGGTT
TGATGATCTCGAACAGCCACAAAGTTATCAAATCTTTGTTAATGATCGTTATTTTAAAAATCGTTTTTTACAACAGCTAA
AAACACAATATCAAGGGAAAACCTTTCCTTTGCAGTTTGTAGCAAGCATTCCCGCTCACTTAACTTGGTCGAAAGTATTA
ATGTTGCCACAAGTGTTAAATGCGCAAGAATGTCATCAACAATGTAAATTTGTGATTGAGAAAGAGCTGCCTATTTTTTT
AGAAGAATTGTGGTTTGATTATCGTTCTACCCCGTTAAAGCAAGGTTTTCGATTAGAGGTTACTGCAATTCGTAAAAGTA
CTGCTCAAACTTATTTGCAAGATTTTCAGCCATTTAAAATTAATGTATTGGATGTTGCATCAAATGCTGTTTTGCGTGCA
TTTCAATATTTGTTGAATGAACAAGTGCGGTCAGAAAATACCTTATTTTTATTTCAAGAAGATGACTATTGCTTGGCGAT
TTGTGAAAGATCTCAGCAATCACAAATTTTACAATCTCACGAAAATTTGACCGCACTTTATGAACAATTTACCGAACGTT
TTGAAGGACAACTTGAACAAGTTTTTGTTTATCAAATTCCCTCAAGTTATACGCCATTACTAGAAAATTGGCAGCGAGTA
GAAACAGAACTCCCTTTTATTGCACTTGGCAACGCGCTATGGCAAAAAGATTTACATCAACAAAAAGTGGGTGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae Rd KW20

98.113

100

0.981
  comA Haemophilus influenzae 86-028NP

96.604

100

0.966

Multiple sequence alignment