Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ES276_RS00200 Genome accession   NZ_CP038252
Coordinates   38712..39482 (+) Length   256 a.a.
NCBI ID   WP_000616158.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901936     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 33712..44482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ES276_RS00185 (ES276_00205) - 35765..36202 (+) 438 WP_000076479.1 CoA-binding protein -
  ES276_RS10790 - 36243..36368 (+) 126 WP_265411150.1 hypothetical protein -
  ES276_RS00190 (ES276_00210) - 36387..37397 (-) 1011 WP_000009157.1 YeiH family protein -
  ES276_RS00195 (ES276_00215) - 37546..38715 (+) 1170 WP_000366342.1 pyridoxal phosphate-dependent aminotransferase -
  ES276_RS00200 (ES276_00220) recO 38712..39482 (+) 771 WP_000616158.1 DNA repair protein RecO Machinery gene
  ES276_RS00205 (ES276_00225) plsX 39479..40471 (+) 993 WP_000717454.1 phosphate acyltransferase PlsX -
  ES276_RS00210 (ES276_00230) - 40477..40710 (+) 234 WP_000136449.1 acyl carrier protein -
  ES276_RS00215 (ES276_00235) - 40747..41046 (+) 300 Protein_36 transposase family protein -
  ES276_RS00220 (ES276_00240) blpU 41249..41479 (+) 231 WP_001093077.1 bacteriocin-like peptide BlpU -
  ES276_RS10795 - 41482..41607 (+) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  ES276_RS00225 (ES276_00245) comA 42195..44348 (+) 2154 WP_000668308.1 peptide cleavage/export ABC transporter ComA Regulator

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29734.30 Da        Isoelectric Point: 5.6115

>NTDB_id=310178 ES276_RS00200 WP_000616158.1 38712..39482(+) (recO) [Streptococcus pneumoniae strain TVO_1901936]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKCMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDKRRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=310178 ES276_RS00200 WP_000616158.1 38712..39482(+) (recO) [Streptococcus pneumoniae strain TVO_1901936]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTTGTCAAAATTTT
TACAGAGCAGGTTGGCAAATGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGCCTCTGTCCAGAGCATTATCATGAGGATAAGAGACGTTGTCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAATTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

98.828

100

0.988

Multiple sequence alignment