Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | CH639_RS04260 | Genome accession | NZ_CP031678 |
| Coordinates | 815196..815717 (-) | Length | 173 a.a. |
| NCBI ID | WP_005656177.1 | Uniprot ID | A0A0H3PDL0 |
| Organism | Haemophilus influenzae strain P679-2791 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 810196..820717
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CH639_RS04225 (CH639_04225) | hpf | 810460..810783 (-) | 324 | WP_005648863.1 | ribosome hibernation-promoting factor, HPF/YfiA family | - |
| CH639_RS04230 (CH639_04230) | bamC | 810956..811603 (-) | 648 | WP_005656191.1 | outer membrane protein assembly factor BamC | - |
| CH639_RS04235 (CH639_04235) | dapA | 811714..812610 (-) | 897 | WP_005656189.1 | 4-hydroxy-tetrahydrodipicolinate synthase | - |
| CH639_RS04240 (CH639_04240) | bcp | 812712..813179 (+) | 468 | WP_005656187.1 | thioredoxin-dependent thiol peroxidase | - |
| CH639_RS04245 (CH639_04245) | exbB | 813323..813775 (+) | 453 | WP_005656185.1 | TonB-system energizer ExbB | - |
| CH639_RS04250 (CH639_04250) | exbD | 813779..814222 (+) | 444 | WP_005656183.1 | TonB system transport protein ExbD | - |
| CH639_RS04255 (CH639_04255) | - | 814232..815011 (+) | 780 | WP_005656179.1 | energy transducer TonB | - |
| CH639_RS04260 (CH639_04260) | ssb | 815196..815717 (-) | 522 | WP_005656177.1 | single-stranded DNA-binding protein | Machinery gene |
| CH639_RS04265 (CH639_04265) | uvrA | 815870..818701 (+) | 2832 | WP_005656175.1 | excinuclease ABC subunit UvrA | - |
Sequence
Protein
Download Length: 173 a.a. Molecular weight: 19187.99 Da Isoelectric Point: 5.2649
>NTDB_id=309790 CH639_RS04260 WP_005656177.1 815196..815717(-) (ssb) [Haemophilus influenzae strain P679-2791]
MAGINKVIIVGHLGNDPEIRTMPNGDAVANISVATSESWNDRNTGERREVTEWHRIVFYRRQAEICGEYLRKGSQVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVMQMLGGRNQNAGGYGNDMGGVPQSSYQARQTNNGGSYQSSRSAPQSATSQPATPQA
EPPMDGFDDDIPF
MAGINKVIIVGHLGNDPEIRTMPNGDAVANISVATSESWNDRNTGERREVTEWHRIVFYRRQAEICGEYLRKGSQVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVMQMLGGRNQNAGGYGNDMGGVPQSSYQARQTNNGGSYQSSRSAPQSATSQPATPQA
EPPMDGFDDDIPF
Nucleotide
Download Length: 522 bp
>NTDB_id=309790 CH639_RS04260 WP_005656177.1 815196..815717(-) (ssb) [Haemophilus influenzae strain P679-2791]
ATGGCTGGAATTAATAAAGTCATTATTGTAGGTCATTTAGGCAATGATCCTGAAATTCGTACTATGCCAAACGGCGATGC
CGTTGCAAATATCAGCGTAGCAACCAGTGAAAGCTGGAACGATCGTAATACGGGCGAACGCCGTGAAGTAACAGAATGGC
ACCGCATTGTATTTTATCGTCGTCAAGCGGAGATTTGCGGCGAATATTTACGCAAAGGTTCTCAAGTATATGTGGAAGGT
CGTTTAAAAACGCGTAAATGGCAAGATCAAAACGGTCAAGATCGCTACACTACAGAAATTCAAGGCGATGTAATGCAAAT
GCTTGGTGGACGTAATCAAAACGCAGGTGGTTATGGTAATGATATGGGTGGCGTACCACAATCCTCTTACCAAGCTCGTC
AAACTAACAATGGTGGTAGTTATCAATCATCTCGTTCTGCGCCACAATCAGCCACATCACAACCAGCAACACCACAGGCT
GAGCCACCAATGGACGGATTCGATGACGATATTCCGTTCTAA
ATGGCTGGAATTAATAAAGTCATTATTGTAGGTCATTTAGGCAATGATCCTGAAATTCGTACTATGCCAAACGGCGATGC
CGTTGCAAATATCAGCGTAGCAACCAGTGAAAGCTGGAACGATCGTAATACGGGCGAACGCCGTGAAGTAACAGAATGGC
ACCGCATTGTATTTTATCGTCGTCAAGCGGAGATTTGCGGCGAATATTTACGCAAAGGTTCTCAAGTATATGTGGAAGGT
CGTTTAAAAACGCGTAAATGGCAAGATCAAAACGGTCAAGATCGCTACACTACAGAAATTCAAGGCGATGTAATGCAAAT
GCTTGGTGGACGTAATCAAAACGCAGGTGGTTATGGTAATGATATGGGTGGCGTACCACAATCCTCTTACCAAGCTCGTC
AAACTAACAATGGTGGTAGTTATCAATCATCTCGTTCTGCGCCACAATCAGCCACATCACAACCAGCAACACCACAGGCT
GAGCCACCAATGGACGGATTCGATGACGATATTCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
64.674 |
100 |
0.688 |
| ssb | Vibrio cholerae strain A1552 |
56.425 |
100 |
0.584 |
| ssb | Neisseria gonorrhoeae MS11 |
51.124 |
100 |
0.526 |
| ssb | Neisseria meningitidis MC58 |
50.562 |
100 |
0.52 |