Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   D7Y56_RS24145 Genome accession   NZ_CP038147
Coordinates   4996973..4998592 (+) Length   539 a.a.
NCBI ID   WP_097243125.1    Uniprot ID   -
Organism   Streptomyces sp. S501     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4991973..5003592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7Y56_RS24110 (D7Y56_24110) lepB 4992186..4992959 (+) 774 WP_030125170.1 signal peptidase I -
  D7Y56_RS24115 (D7Y56_24115) lepB 4992952..4994009 (+) 1058 Protein_4469 signal peptidase I -
  D7Y56_RS24120 (D7Y56_24120) lepB 4993927..4994808 (+) 882 WP_134667222.1 signal peptidase I -
  D7Y56_RS24125 (D7Y56_24125) lepB 4994858..4995631 (+) 774 WP_014153804.1 signal peptidase I -
  D7Y56_RS24130 (D7Y56_24130) - 4995621..4996109 (+) 489 WP_134666239.1 NUDIX hydrolase -
  D7Y56_RS24135 (D7Y56_24135) - 4996173..4996481 (+) 309 WP_003965949.1 DUF2469 domain-containing protein -
  D7Y56_RS24140 (D7Y56_24140) - 4996614..4996973 (+) 360 WP_015578919.1 YraN family protein -
  D7Y56_RS24145 (D7Y56_24145) comM 4996973..4998592 (+) 1620 WP_097243125.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  D7Y56_RS24150 (D7Y56_24150) dprA 4998589..4999771 (+) 1183 Protein_4476 DNA-processing protein DprA -
  D7Y56_RS24155 (D7Y56_24155) whiG 5000034..5000870 (+) 837 WP_014153799.1 RNA polymerase sigma factor WhiG -
  D7Y56_RS24160 (D7Y56_24160) - 5000968..5001525 (+) 558 WP_015578923.1 TetR/AcrR family transcriptional regulator -
  D7Y56_RS24165 (D7Y56_24165) - 5001549..5002196 (-) 648 Protein_4479 M23 family metallopeptidase -
  D7Y56_RS24170 (D7Y56_24170) rpsB 5002565..5003485 (+) 921 WP_014153797.1 30S ribosomal protein S2 -

Sequence

Protein


Download         Length: 539 a.a.        Molecular weight: 55526.91 Da        Isoelectric Point: 7.0443

>NTDB_id=309655 D7Y56_RS24145 WP_097243125.1 4996973..4998592(+) (comM) [Streptomyces sp. S501]
MGFARACSVALVGVEGVVVEVQADLEPGVAAFTLVGLPDKSLVESRDRVRAAVVNSGAEWPQKKLTVGLSPASVPKSGSG
FDLAVACAVLGAAERIDPAAVADVVMIGELGLDGRVRPVRGVLPAVLAAAEAGYRHVVVPEQTAGEAALVPGISVLGVRS
LRQLIAVLGDEPVPEEPDPDRGRPDTMLAGLMVPGAGLGTGLAPLTDGTAHRPDLADVAGQGRARKALEVAAAGGHHLLL
SGPPGAGKTMLAERLTAILPPLSRQESLEVTAVHSVAGILPPGEPLIGAAPYCAPHHSATMQSLVGGGNGLPRPGAVSLA
HRGVLFLDEAPEFSVRALDALRQPLESGHVVVARAAGVVRLPARFLMVLAANPCPCGRHTLAGAGCECPPSAVRRYQARL
SGPLLDRVDLRVEVEPVGRADLMGSGGRGESSADVAARVREARERAAERLTGTPWTTNSEVPGHELRTRLVAAPGALMAA
ERDMERGVLTARGLDRVLRVAWTVADLRGADRPDATDVAVALELRTGIQRGVPMRAGAR

Nucleotide


Download         Length: 1620 bp        

>NTDB_id=309655 D7Y56_RS24145 WP_097243125.1 4996973..4998592(+) (comM) [Streptomyces sp. S501]
ATGGGGTTCGCGCGGGCGTGCTCGGTGGCCCTGGTGGGCGTCGAGGGCGTGGTGGTGGAGGTCCAGGCCGATCTGGAGCC
GGGCGTGGCGGCGTTCACGCTCGTCGGCCTCCCGGACAAGAGCCTGGTGGAGAGCCGGGACCGGGTCAGGGCCGCGGTCG
TCAATTCCGGGGCCGAGTGGCCGCAGAAGAAGCTCACGGTGGGGTTGTCGCCCGCCTCTGTGCCGAAGTCCGGCTCGGGT
TTCGATCTGGCCGTGGCGTGCGCGGTCCTCGGAGCGGCCGAGAGGATCGACCCCGCCGCCGTCGCCGATGTGGTGATGAT
CGGGGAGCTGGGCCTGGACGGCCGGGTGCGCCCGGTGCGCGGGGTGCTGCCCGCCGTACTCGCGGCGGCGGAAGCCGGGT
ACCGGCACGTCGTCGTCCCGGAGCAGACCGCGGGGGAGGCCGCGCTGGTCCCGGGCATCTCCGTGCTCGGCGTGCGGAGC
CTGCGCCAGCTGATCGCCGTCCTCGGCGACGAACCCGTCCCCGAGGAGCCGGACCCCGACCGCGGACGTCCCGACACGAT
GCTCGCCGGACTCATGGTGCCGGGCGCGGGGCTCGGCACAGGACTGGCCCCCCTGACGGACGGCACGGCGCACCGGCCCG
ACCTGGCCGACGTCGCGGGCCAGGGCCGGGCCCGCAAGGCCCTGGAGGTGGCGGCGGCGGGCGGACACCACCTGCTGCTG
TCCGGGCCGCCGGGGGCGGGTAAGACCATGCTCGCCGAGCGGCTCACGGCGATCCTGCCGCCGCTGTCCCGGCAGGAGTC
CCTCGAAGTGACCGCGGTGCACTCCGTGGCGGGCATCCTCCCGCCGGGCGAACCCCTGATCGGCGCGGCACCGTACTGCG
CGCCGCACCACTCGGCGACGATGCAGTCGCTCGTCGGCGGGGGGAACGGTCTGCCGAGACCGGGAGCGGTGTCCCTGGCG
CACCGGGGCGTGCTCTTCCTGGACGAGGCGCCCGAGTTCTCCGTACGGGCACTGGACGCGTTGCGCCAGCCGCTGGAGTC
CGGGCACGTGGTGGTCGCGAGGGCGGCCGGGGTCGTCCGGCTGCCGGCGCGCTTCCTGATGGTCCTGGCCGCGAATCCCT
GTCCCTGCGGCAGGCACACGCTGGCCGGTGCGGGCTGCGAGTGCCCGCCGTCGGCGGTCCGCCGCTACCAGGCGCGGCTG
TCGGGGCCCCTGCTCGACCGGGTGGACCTGCGGGTAGAGGTCGAGCCCGTCGGCAGGGCGGACCTCATGGGGAGCGGCGG
GCGCGGGGAGTCCTCGGCCGACGTGGCCGCGAGGGTCCGGGAAGCCAGGGAGCGGGCCGCGGAGAGGCTCACCGGCACGC
CCTGGACCACCAACAGCGAAGTGCCCGGACACGAGCTGCGTACACGGCTGGTCGCGGCGCCCGGCGCCCTGATGGCGGCG
GAGCGGGACATGGAGCGGGGTGTGCTCACGGCCCGTGGCCTGGACCGCGTCCTGCGCGTGGCGTGGACCGTGGCGGACCT
GAGGGGTGCCGACCGCCCGGACGCCACGGACGTCGCGGTCGCACTCGAACTGCGTACGGGCATCCAGCGAGGGGTCCCGA
TGCGAGCCGGTGCCCGGTGA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(214-419)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(429-525)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

40.304

97.588

0.393
  comM Vibrio cholerae O1 biovar El Tor strain E7946

40.9

94.805

0.388
  comM Vibrio cholerae strain A1552

40.9

94.805

0.388
  comM Haemophilus influenzae Rd KW20

39.015

97.959

0.382
  comM Acinetobacter baylyi ADP1

38.403

97.588

0.375
  comM Glaesserella parasuis strain SC1401

36.961

98.887

0.365

Multiple sequence alignment