Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   D7Y56_RS18635 Genome accession   NZ_CP038147
Coordinates   3803229..3803861 (-) Length   210 a.a.
NCBI ID   WP_015578190.1    Uniprot ID   A0ABZ1KA75
Organism   Streptomyces sp. S501     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3798229..3808861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7Y56_RS18610 (D7Y56_18610) - 3799094..3800005 (+) 912 WP_015578187.1 aminoglycoside phosphotransferase family protein -
  D7Y56_RS18615 (D7Y56_18615) - 3800033..3800509 (+) 477 WP_014154876.1 GNAT family N-acetyltransferase -
  D7Y56_RS18620 (D7Y56_18620) - 3800573..3801760 (-) 1188 WP_015578188.1 NAD(P)-binding protein -
  D7Y56_RS18625 (D7Y56_18625) - 3801860..3802567 (+) 708 WP_078468409.1 pentapeptide repeat-containing protein -
  D7Y56_RS18630 (D7Y56_18630) - 3802620..3803117 (-) 498 WP_014154873.1 hypothetical protein -
  D7Y56_RS18635 (D7Y56_18635) vraR 3803229..3803861 (-) 633 WP_015578190.1 response regulator transcription factor Regulator
  D7Y56_RS18640 (D7Y56_18640) - 3803858..3805285 (-) 1428 WP_106972204.1 sensor histidine kinase -
  D7Y56_RS18645 (D7Y56_18645) - 3805540..3806097 (+) 558 WP_134665772.1 heme-binding protein -
  D7Y56_RS18650 (D7Y56_18650) - 3806243..3807820 (-) 1578 WP_134665774.1 M4 family metallopeptidase -
  D7Y56_RS18655 (D7Y56_18655) - 3808052..3808627 (-) 576 WP_014154868.1 TerD family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22091.32 Da        Isoelectric Point: 4.7890

>NTDB_id=309643 D7Y56_RS18635 WP_015578190.1 3803229..3803861(-) (vraR) [Streptomyces sp. S501]
MTPSVRILLCDDHAVVRAGLLALLGGEPDIDVVGEAGSGEEAVALAAQLTPDVVLMDLQLGSGIDGVEATRRIATAGAGA
VNVLVLTTYDTDADITRAIEAGATGYLLKAERPEELFAAIRAAAQGRTTLSPPVASRVMARMRSPRPTLTERELDILGQL
SQGLGNRDIARALFISEATVKTHLGRIYEKLDVDTRAGAVSVAKEQRLLP

Nucleotide


Download         Length: 633 bp        

>NTDB_id=309643 D7Y56_RS18635 WP_015578190.1 3803229..3803861(-) (vraR) [Streptomyces sp. S501]
ATGACCCCGTCCGTACGGATCCTGCTCTGCGACGACCACGCCGTCGTACGGGCCGGACTGCTCGCCCTGCTCGGCGGCGA
ACCCGACATCGACGTCGTGGGCGAGGCGGGCAGCGGGGAGGAGGCCGTCGCCCTCGCCGCACAGCTCACGCCCGACGTCG
TCCTGATGGACCTCCAGCTGGGCTCGGGCATCGACGGTGTCGAGGCGACCCGCCGCATCGCCACCGCCGGGGCCGGCGCG
GTCAACGTGCTCGTCCTCACGACGTACGACACCGACGCGGACATCACCCGGGCCATCGAGGCGGGAGCCACCGGCTACCT
GCTGAAGGCCGAACGCCCGGAAGAACTCTTCGCCGCGATCCGGGCCGCCGCACAGGGCCGCACGACACTCTCCCCGCCGG
TCGCCAGCCGGGTCATGGCCCGGATGCGCAGCCCCCGGCCCACCCTGACCGAACGCGAACTCGACATCCTGGGCCAGCTG
TCACAGGGCCTCGGCAACCGTGACATCGCACGAGCCCTCTTCATCAGCGAGGCCACCGTCAAGACCCACCTGGGACGGAT
CTACGAGAAGCTCGACGTGGACACCAGGGCGGGAGCGGTATCCGTCGCCAAGGAGCAACGCCTGCTCCCGTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(7-121)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.756

99.524

0.386
  degU Bacillus subtilis subsp. subtilis str. 168

34.545

100

0.362
  letA Legionella pneumophila str. Paris

36.19

100

0.362
  letA Legionella pneumophila strain ERS1305867

36.19

100

0.362

Multiple sequence alignment